PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G05610.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 365aa    MW: 41090.8 Da    PI: 7.3969
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G05610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like482.7e-15165214455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F++a++ L G+  A Pk+i+ +m+v+ + + +++ HLQk+Rl
  LPERR04G05610.1 165 LIWTPHLQRKFLHALQIL-GE-DASPKKIKMIMDVDNIDRRQIAAHLQKHRL 214
                      68****************.55.5****************************8 PP
2Response_reg48.35.3e-1711082107
                      EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +++d+++  ++    +l+ + ++ +v++++++ +al  lk++   +Dl+l+D+ m +m+G+e+lk  re ++++++i+++++ ++  +++ +k+
  LPERR04G05610.1   1 MVIDEDECHADSTSCMLSaELNF-SVTVFTSPMKALYFLKNHAegVDLVLVDVHMEEMTGFEFLKVAREIHKSIQVIMMSTETTMHAMKRSVKL 93 
                      68999999999999999999999.*****************9999************************************************* PP

                      TESEEEESS--HHHH CS
     Response_reg  93 GakdflsKpfdpeel 107
                      Ga+  + Kp + + +
  LPERR04G05610.1  94 GARFLVKKPLNGRTI 108
                      *********987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001562.44E-161115No hitNo description
PROSITE profilePS5011025.3461116IPR001789Signal transduction response regulator, receiver domain
SMARTSM004485.6E-81112IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.7E-201115IPR011006CheY-like superfamily
PfamPF000724.2E-151109IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.5E-211115No hitNo description
Gene3DG3DSA:1.10.10.601.8E-15160218IPR009057Homeodomain-like
SuperFamilySSF466893.23E-11160218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-15165216IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVIDEDECHA DSTSCMLSAE LNFSVTVFTS PMKALYFLKN HAEGVDLVLV DVHMEEMTGF  60
EFLKVAREIH KSIQVIMMST ETTMHAMKRS VKLGARFLVK KPLNGRTIQN LWQHLDLKVL  120
RMEKIKDLLQ GNNRNVGGGD NSNCADETNP FAENLKVDTK KKYCLIWTPH LQRKFLHALQ  180
ILGEDASPKK IKMIMDVDNI DRRQIAAHLQ KHRLQQKKNL NKASFTKGTS EDGSNSGKEP  240
HLYTQPTETT ELNHTKMEIL LKDANRKDVY AAMRRTLRHG TVCDESKYPS DPSGDEQLVV  300
GGDGHADEAS VINSSFGDQQ IIAPCNTVSS QEMMNKITSC DMQTTRGSKK AAVFRLVNYS  360
DSESD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G05610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691407.11e-144PREDICTED: two-component response regulator ORR29-like
SwissprotB8ASH81e-172ORR29_ORYSI; Two-component response regulator ORR29
TrEMBLA0A0D9W3N20.0A0A0D9W3N2_9ORYZ; Uncharacterized protein
STRINGLPERR04G05610.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-21response regulator 14