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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G05430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 491aa MW: 53515.1 Da PI: 9.9594 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.8 | 1.4e-11 | 128 | 188 | 34 | 98 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++ ++ g++W++k+ r ++gr +l++GW +F+ a+gL +g fvv+++ ++ l v +f+ LPERR04G05430.1 128 RVVMVGSPVGKVWDIKV-GRDGDGRAFLGRGWPDFAAAHGLGVGWFVVLRHR---GGVLAVEAFD 188 46788889*********.567777799***********************54...4556777776 PP | |||||||
2 | B3 | 39 | 1.4e-12 | 227 | 303 | 15 | 94 |
-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++p kf++++ +++ +s t + ++ g+s ++l ++ +++++l++GW++F +g+ gD+++F++ g+ f ++ LPERR04G05430.1 227 KMRIPDKFVQHYlTEENLNSNTANILSSLGKSCHIEL--ENDRSGVFLKGGWSQFLLFHGISRGDVILFRYGGNLVF--KI 303 489******888944456788****************..*******************************9886665..33 PP | |||||||
3 | B3 | 70.7 | 1.9e-22 | 392 | 483 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ++k++++++ lk+++++l ++f+e++g ++e+ t+tl +g rsWev r+ +++ y+l++GWk+F+++n Lk+gD+++F ++++ LPERR04G05430.1 392 WIKKEINEYILKRCLVSLARTFCESIGFSEES--TITLIEAEGenscgsRSWEVAG--RRDKEAcYLLGAGWKRFCEDNSLKVGDVCTFNVVDN 481 789***********************988655..89999999999***********..9999889*************************7653 PP SEE.. CS B3 88 sefel 92 ++ LPERR04G05430.1 482 ---TM 483 ...33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0035 | 82 | 190 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-11 | 84 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-10 | 85 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.4E-9 | 126 | 188 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.573 | 129 | 190 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.32E-9 | 137 | 188 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-16 | 212 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-16 | 213 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.038 | 213 | 309 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.31E-11 | 214 | 306 | No hit | No description |
SMART | SM01019 | 0.0021 | 216 | 309 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-11 | 227 | 301 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 392 | 491 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 392 | 489 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-9 | 393 | 491 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-17 | 394 | 489 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.78E-9 | 397 | 476 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-15 | 398 | 490 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MACGQGSPAR MLSDVGMLGQ PLLGSSRQTE DAYGFVKMRA QKGLPAFRSV SIGGCNDSIS 60 RPAMGSRGGD RRETGGGGAA VQLKVLVPSS FRRMRICDEL AARLGLGAVG GGRGQGDATR 120 AAAVATARVV MVGSPVGKVW DIKVGRDGDG RAFLGRGWPD FAAAHGLGVG WFVVLRHRGG 180 VLAVEAFDTT CCLKEFGADS SAFMTSGSGI ARKPQFLGVL LPDFMEKMRI PDKFVQHYLT 240 EENLNSNTAN ILSSLGKSCH IELENDRSGV FLKGGWSQFL LFHGISRGDV ILFRYGGNLV 300 FKINVFGLNG RQKDFRAKSI NIHQSTGKQQ EAPAFPRRKC KEKNKKFGKG NENQQESPCS 360 WGVSCKKGRK SDRDRNSAKR SRSTYEIGSS AWIKKEINEY ILKRCLVSLA RTFCESIGFS 420 EESTITLIEA EGENSCGSRS WEVAGRRDKE ACYLLGAGWK RFCEDNSLKV GDVCTFNVVD 480 NTMWHVVIER S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G05430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691403.1 | 1e-127 | PREDICTED: putative B3 domain-containing protein Os04g0346900 | ||||
Swissprot | Q7XS75 | 0.0 | Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | A0A0D9W3K6 | 0.0 | A0A0D9W3K6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G05430.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 1e-12 | B3 family protein |