PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G04520.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 286aa    MW: 30927.1 Da    PI: 4.6412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G04520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-1380124655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI+ Lq
  LPERR04G04520.1  80 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQRLQ 124
                      579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.03774123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1778140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-1478128No hitNo description
PfamPF000101.5E-1079124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1780141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1680129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.78E-5206269No hitNo description
CDDcd048730.00111208274No hitNo description
PROSITE profilePS516718.505209285IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDAAEMAMGD SFAYYWETKM YLESEELVDS MYLPMQEDSN YESSSPDGSH SSSAAVDGVA  60
GAGAGGDAPA CGDAGANKNI LMERDRRRKL NEKLYALRSV VPNITKMDKA SIIKDAIEYI  120
QRLQAEEQQM LREVAALESS AAAAANQFAV AGEHDEYLGY GYGAIDGVAA QRKKVRRALS  180
VSSMSDALAA APVEIQELRV SEVGEKVLVV SVTCGKRRDA MARVCRALEE LRLRVITANI  240
TSVAGCLMHT LFVEVDHMDS VQMKQMVEAA LSQLVGTSSP LSSMSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176QRKKVRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G04520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422101e-118AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.11e-121transcription factor bHLH35
TrEMBLA0A0D9W3A70.0A0A0D9W3A7_9ORYZ; Uncharacterized protein
STRINGLPERR04G04520.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-45bHLH family protein