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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G04510.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28235.5 Da PI: 6.3652 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 93 | 138 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er+RR+r+N+++ eLr ++P+ +K++Ka+i++ A+ +I +Lq LPERR04G04510.3 93 NIVMERNRRKRLNKKLYELRAVVPNI-----TKMDKASIVRDAIAHIEKLQ 138 5679*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.745 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.82E-11 | 91 | 136 | No hit | No description |
SuperFamily | SSF47459 | 1.24E-16 | 91 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-10 | 93 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 94 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-15 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
METASDMGFL LDLYWHTPHF LNTFDLAAVA ADSLMDNFGM YVPSPEKDGS LSDLFAYSSH 60 YDDESSPEVA NSCSTVAAAA AAAAAATAAS SKNIVMERNR RKRLNKKLYE LRAVVPNITK 120 MDKASIVRDA IAHIEKLQEE ERQLLEEISA LQPAVVPTAG AAVKEDDGVA LPRLKRMRCT 180 PRVDDSPPLQ ILQLEVSKVG ESTIAVSIRC AKTRDAMAKL CRAMELLRLK VVSANAAAVD 240 GTIVHTMFVE NKWVVLMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G04510.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633867.1 | 3e-95 | transcription factor bHLH35 | ||||
TrEMBL | A0A0D9W3A6 | 0.0 | A0A0D9W3A6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G04510.1 | 1e-166 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 1e-24 | bHLH family protein |