PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G04510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 30525.2 Da PI: 7.8989 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 93 | 138 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er+RR+r+N+++ eLr ++P+ +K++Ka+i++ A+ +I +Lq LPERR04G04510.1 93 NIVMERNRRKRLNKKLYELRAVVPNI-----TKMDKASIVRDAIAHIEKLQ 138 5679*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.745 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 91 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.82E-11 | 91 | 136 | No hit | No description |
Pfam | PF00010 | 3.3E-10 | 93 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-14 | 94 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-15 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
METASDMGFL LDLYWHTPHF LNTFDLAAVA ADSLMDNFGM YVPSPEKDGS LSDLFAYSSH 60 YDDESSPEVA NSCSTVAAAA AAAAAATAAS SKNIVMERNR RKRLNKKLYE LRAVVPNITK 120 MDKASIVRDA IAHIEKLQEE ERQLLEEISA LQPAVVPTAG AAVKEDDGVA LPRLKRMRCT 180 PRVDDSPPLQ ILQLEVSKVG ESTIAVSIRC AKTRDAMAKL CRAMELLRLK VVSANAAAVD 240 GTIVHTMFVE KLDQTLCKGY KHYNGVRRQN KWVVLMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G04510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633867.1 | 1e-94 | transcription factor bHLH35 | ||||
TrEMBL | A0A0D9W3A4 | 0.0 | A0A0D9W3A4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G04510.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 2e-24 | bHLH family protein |