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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G01660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 18027.1 Da PI: 8.1616 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H LPERR04G01660.1 45 YTCGYCRREFRSAQALGGHMNVH 67 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.79E-7 | 43 | 72 | No hit | No description |
PROSITE profile | PS50157 | 11.51 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-6 | 45 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MESRSARDHG QQHHHHQHSR PWSCSFSLPA GFSWPPQRSP SSSSYTCGYC RREFRSAQAL 60 GGHMNVHRRE RARLRQCPNP SSIVHGGRTH PLPNLNFSPP SPPLPQQQEY YCSGDRPAVV 120 YSFFSTTATA MAVTKGLEVD LELEVGGGIE EGLDLELRLG CS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G01660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL663013 | 4e-47 | AL663013.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence. | |||
GenBank | AP014960 | 4e-47 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 4e-47 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880331.1 | 5e-58 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A0D9W296 | 1e-116 | A0A0D9W296_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G01660.1 | 1e-117 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 5e-16 | zinc finger protein 11 |