PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G01470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 330aa    MW: 35406.2 Da    PI: 8.3786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G01470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.1e-07172194123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  Cgk F+r  nL+ H+r H
  LPERR04G01470.1 172 HYCAVCGKGFKRDANLRMHMRAH 194
                      68*******************99 PP
2zf-C2H2130.00032258281123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k F   s+L++H + +
  LPERR04G01470.1 258 YVCGRCGgKEFAVLSDLRTHEKHC 281
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.03E-6171197No hitNo description
PROSITE profilePS5015712.528172199IPR007087Zinc finger, C2H2
SMARTSM003550.011172194IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-6172196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM00355180220253IPR015880Zinc finger, C2H2-like
SMARTSM0035533258280IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNPQEFQFFQ GVEQEMLMLS HGGGGGGVAA PPATAAAASD EVLTYHLAVL RDKVQQLEPL  60
VGMVAYPRRD ATGAGAATAM AASTACSVLH DITAAASAVS HRLDQQQMFA AAPAHGEGAG  120
QVFDHGPSLV FPATTTVTDR VPASSTSVVV AGDGDIDVVE LEASYLLARY THYCAVCGKG  180
FKRDANLRMH MRAHGDEYKT SAALSSSAGG EKKSRRRCYY SCPAEGCRWN RRHERFQPLK  240
SVVCAKNHYR RSHCPKMYVC GRCGGKEFAV LSDLRTHEKH CGELRWLCSC GTFFSRKDKL  300
LGHVALFAAG HAPVPVAPAA PPAVERSSRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G01470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4421131e-151AL442113.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence.
GenBankCP0126121e-151CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCT8379281e-151CT837928.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.11e-135protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT246e-92STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0D9W2760.0A0A0D9W276_9ORYZ; Uncharacterized protein
STRINGLPERR04G01470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-83C2H2 family protein