PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G00350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 422aa    MW: 44313.9 Da    PI: 9.956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G00350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05216238223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       C+ Cg++F+  ++L++H+   H
  LPERR04G00350.1 216 ACSQCGEMFTKAESLEHHQAIrH 238
                      6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.201215243IPR007087Zinc finger, C2H2
PROSITE patternPS000280215238IPR007087Zinc finger, C2H2
SuperFamilySSF563992.85E-9271417No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MALSTVLLPS SSSSSSSKTT AATVTETSDR RRHHHHQSHT KRKKKPPPPP SLSPTPRTPP  60
PPGSVSHRAM AAASSSKIKS GSSKQKKQVV AAAAGKKALK TTTPPASSWE QVKSLLSCRS  120
ATAASRVHDP AAARHGAGAC GASLCAIRDV VDAASSSTTL DRDTTPLTGR SSRRRAGGHH  180
QQPSSSLRGL SGCYECRAIN VEPISRRYPR PRELCACSQC GEMFTKAESL EHHQAIRHAG  240
SYCLVHNAAR TVARFEAYRD AVRTAAARAA ARAAADGNEL LRFHSAPLAC PLGLNGATSL  300
CSSSDDDDPA APCGVCAAIR HGFAPWVAAH PLGVRTTASS GRAHDCATAT AKQSGCRAML  360
VCRVIAGRVR RSDGEEEGAF DSVAGDEAAS TSVYGNLEEL FVANPRAILP CFVVIYRVAD  420
HH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12944RRRHHHHQSHTKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G00350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2268541e-115EU226854.1 Oryza barthii isolate H10 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634299.11e-149uncharacterized protein LOC4334944
TrEMBLA0A0D9W1U60.0A0A0D9W1U6_9ORYZ; Uncharacterized protein
STRINGLPERR04G00350.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-52C2H2-like zinc finger protein