PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G00260.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 709aa    MW: 77201 Da    PI: 4.6813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G00260.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09181222346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT +E +ll++a + +  + W  Ia+++  ++t  qc +++++
  LPERR04G00260.2 181 SWTDQETLLLLEALEIFQAK-WGDIAEHVA-TKTKAQCMLHFLQ 222
                      7*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.6E-5144IPR009057Homeodomain-like
PROSITE profilePS5093411.376152IPR007526SWIRM domain
Gene3DG3DSA:1.10.10.102.2E-4347IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF578503.06E-10119163No hitNo description
PROSITE profilePS501358.753119165IPR000433Zinc finger, ZZ-type
SMARTSM002911.1E-5119163IPR000433Zinc finger, ZZ-type
PfamPF005693.7E-5122154IPR000433Zinc finger, ZZ-type
CDDcd023367.96E-21123167No hitNo description
PROSITE patternPS013570125151IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129319.489177228IPR017884SANT domain
SMARTSM007171.4E-9178226IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-10178227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-6180220IPR009057Homeodomain-like
PfamPF002497.1E-9181223IPR001005SANT/Myb domain
PfamPF164952.5E-22600678IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MKKFHANPQM HLEFKDLSEL PDGEMDARLE VLEFLSHWGL INFHPFPPAG QGLSELVESI  60
TSADTEGKIS VVEKLFQFET MQSYLIPAPN QPDVAAPIYA PSLLSEPTLA EDFITQVESS  120
VEYHCNSCSV DCSRKRYHCR TQADFDLCCD CYDEGKLDSG MSQTDFILME SADIPGFGST  180
SWTDQETLLL LEALEIFQAK WGDIAEHVAT KTKAQCMLHF LQMPIMDSFL HDGDANETSH  240
ETAEKVSAEQ GTSRVTEKTE VGKAEGTKTN NGKAAAKTRL NLTETGGNLD DHVVANTNTN  300
CSIDIIVDAS GKTGESNRSS DTEPTKKETS GENTSNFVDN VLKNAFEAVG HIPNKEDLGS  360
FTEAGNPVMA LAAFLSGLVD HDDATMLCCS SLKAISDMSP ALQLATMHCF ILQDPPNDLK  420
DLPVSSANTD GGQQKDKDAI SNPNVTDKDE NLKEGSALSV EEQSTTSTSS KNTRELSNTK  480
ESKNGSSQVD PKSTGANDYE NPICEVVKSA SDNIRGHSST SLHVSLNNRN EPCSISSQEA  540
SAGSTKDTSE IEHEVTDLST VQQHESIRTS LKNGNIQDPN SIKDMVADGL SIQRLQQAAA  600
TAISAAAVKA KLLAKQEEYE IQQLAALVID KQLHKMQAKM AFFTEVENLV LQARSHTEKT  660
RKKLLMDRNA IIASRMAAMP PRPPPNQPGM PGSRLPVGYG VNQQHLRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G00260.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639940.0AK063994.1 Oryza sativa Japonica Group cDNA clone:001-124-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633469.10.0SWI/SNF complex subunit SWI3D isoform X1
TrEMBLA0A0D9W1T70.0A0A0D9W1T7_9ORYZ; Uncharacterized protein
STRINGOS04T0110300-020.0(Oryza sativa)