PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C3H

Protein Properties

Length: 819aa MW: 89959.3 Da PI: 5.4355

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G00120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.9	4e-09	37	68	1	27
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r G C++G++C++aH++ LPERR04G00120.1 37 WKTSLCSFFRRRGvsaadGCSHGESCRYAHSE 68 8*****************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.2E-12	33	74	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.91E-6	34	73	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	36	68	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.094	36	69	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.1E-7	37	68	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.70.330	1.9E-5	165	214	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS51687	25.667	258	819	IPR010280	(Uracil-5)-methyltransferase family
SuperFamily	SSF53335	3.61E-28	260	286	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	3.61E-28	318	421	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	3.61E-28	480	562	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	6.0E-36	526	562	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	6.0E-36	704	759	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	3.61E-28	707	819	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF05958	1.0E-6	712	755	IPR010280	(Uracil-5)-methyltransferase family
PROSITE pattern	PS01230	0	715	747	IPR030390	RNA methyltransferase TrmA, active site
Gene3D	G3DSA:3.40.50.150	6.0E-36	794	819	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001510	Biological Process	RNA methylation
GO:0006396	Biological Process	RNA processing
GO:0000166	Molecular Function	nucleotide binding
GO:0008173	Molecular Function	RNA methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MEENTKSPPS DLAGAGEKRK REEDATINSN SGQHPMWKTS LCSFFRRRGV SAADGCSHGE 60 SCRYAHSEEE LRPRPDGTWD PTSDRAKKLR KVAEEEVEEE TVTVDDTALD KCLVGLPRGW 120 AADRLKTFLQ DKARTAKTKT RKLYAYTLLH MHDSIFRWQA GISYATAKKK KGMTVGFVTF 180 ENIEQLKNAI EVLAENQSGG KEIKIADANR RSHQKLHPER PVSDNGVSTE NGTSVDIPPG 240 GTSAPEAAIS SKKSVRDAVT PLAHMSYNDQ LEHKKNSIAQ ILKRLTRNAR KACPTAIPLP 300 DWVFKSKEIG GLPCKLEGIL ESPVINGYRN KCEFSVGFSL EGKKTVGFML GNFREGVTAV 360 EEPVDCPNVS EISCNYALMF QDFLQSSSLP VWNRIDNCGF WRQFTVREGR CSAQAVAQNA 420 ETQISEVMLI VQVCSTGVDE ALMKDEFDKL TVALEQGAAT CTPPLPLTTI VVQDHKGISN 480 AAPADCPLIP LMVPNIDQSE GMVDKTRIHD HISNLRFSIS PTAFFQVVGI EMNESAVSDA 540 QRNALINGVE NCRFVCGKAE DVMGSLLTEY LGSPQQEIPV SEGEVSVTSK DKEATDDSQN 600 NGENMDSLMP KKDSGEDQQF RDTSADCSSV IDEIKGTSTD RDSNGLEGSH DENNEAEAVG 660 EDICGEVLLI SEPVDMKVSD CLEKSKTCQG GSSTSNNDVT ATTACQFQDI VAIVDPPRVG 720 LHPTVIKALR THPRIRRLVY ISCNPDSLVA NAIELCTPSS EKQEKNKGNR GWRTMSSAGL 780 ARQRTKSMPN SEPFVPKRAM AVDLFPHTSH CEMVMLFER

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MEENTKSPPS DLAGAGEKRK REEDATINSN SGQHPMWKTS LCSFFRRRGV SAADGCSHGE  60
SCRYAHSEEE LRPRPDGTWD PTSDRAKKLR KVAEEEVEEE TVTVDDTALD KCLVGLPRGW  120
AADRLKTFLQ DKARTAKTKT RKLYAYTLLH MHDSIFRWQA GISYATAKKK KGMTVGFVTF  180
ENIEQLKNAI EVLAENQSGG KEIKIADANR RSHQKLHPER PVSDNGVSTE NGTSVDIPPG  240
GTSAPEAAIS SKKSVRDAVT PLAHMSYNDQ LEHKKNSIAQ ILKRLTRNAR KACPTAIPLP  300
DWVFKSKEIG GLPCKLEGIL ESPVINGYRN KCEFSVGFSL EGKKTVGFML GNFREGVTAV  360
EEPVDCPNVS EISCNYALMF QDFLQSSSLP VWNRIDNCGF WRQFTVREGR CSAQAVAQNA  420
ETQISEVMLI VQVCSTGVDE ALMKDEFDKL TVALEQGAAT CTPPLPLTTI VVQDHKGISN  480
AAPADCPLIP LMVPNIDQSE GMVDKTRIHD HISNLRFSIS PTAFFQVVGI EMNESAVSDA  540
QRNALINGVE NCRFVCGKAE DVMGSLLTEY LGSPQQEIPV SEGEVSVTSK DKEATDDSQN  600
NGENMDSLMP KKDSGEDQQF RDTSADCSSV IDEIKGTSTD RDSNGLEGSH DENNEAEAVG  660
EDICGEVLLI SEPVDMKVSD CLEKSKTCQG GSSTSNNDVT ATTACQFQDI VAIVDPPRVG  720
LHPTVIKALR THPRIRRLVY ISCNPDSLVA NAIELCTPSS EKQEKNKGNR GWRTMSSAGL  780
ARQRTKSMPN SEPFVPKRAM AVDLFPHTSH CEMVMLFER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G00120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120156	0.0	AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636996.1	0.0	zinc finger CCCH domain-containing protein 24 isoform X1
Swissprot	Q8L7S3	1e-175	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A0D9W1R9	0.0	A0A0D9W1R9_9ORYZ; Uncharacterized protein
STRING	LPERR04G00120.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8493	31	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	1e-168	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]