PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

WRKY

Protein Properties

Length: 378aa MW: 40694.5 Da PI: 7.0526

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G35420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	189	247	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ LPERR03G35420.1 189 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 247 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.247	183	249	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.1E-30	186	249	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	187	249	IPR003657	WRKY domain
SMART	SM00774	4.3E-38	188	248	IPR003657	WRKY domain
Pfam	PF03106	8.4E-26	190	247	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MDMMEQEANA GTAQAAAGDL ADVVARASSS SNANARPLLH HHHHHHHHHH SPLPLPLPLP 60 LPPMPPHHQY YQEQIWHPTT TIACSDAAPV PGVSSSLDSY LSPPASSFGM PQQQLAVQIS 120 QHAAAGDVLM GGACPAADDA EDAINRISPL TPSAHHQMMK RKNEVKKVVC IPAPPATSGR 180 GGGGEVIPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC MARKQVERSR SDPNMLVITY 240 TAEHNHPWPM QRNVLAGYAR SHHTNATAST SNNRHKQQQQ QPPAALISAT CSSSSSSSSS 300 SCNAVHADML GGQPANMMMI TEAGAGLGNS ADFQPAADEV FAELEELEPD NPTMIDPNMV 360 YSMASNSRPA GSYEWHRF

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MDMMEQEANA GTAQAAAGDL ADVVARASSS SNANARPLLH HHHHHHHHHH SPLPLPLPLP  60
LPPMPPHHQY YQEQIWHPTT TIACSDAAPV PGVSSSLDSY LSPPASSFGM PQQQLAVQIS  120
QHAAAGDVLM GGACPAADDA EDAINRISPL TPSAHHQMMK RKNEVKKVVC IPAPPATSGR  180
GGGGEVIPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC MARKQVERSR SDPNMLVITY  240
TAEHNHPWPM QRNVLAGYAR SHHTNATAST SNNRHKQQQQ QPPAALISAT CSSSSSSSSS  300
SCNAVHADML GGQPANMMMI TEAGAGLGNS ADFQPAADEV FAELEELEPD NPTMIDPNMV  360
YSMASNSRPA GSYEWHRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-23	162	249	2	79	Disease resistance protein RRS1
5w3x_D	2e-23	162	249	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G35420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109795	1e-152	AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650925.1	1e-123	PREDICTED: probable WRKY transcription factor 14
Swissprot	O64747	8e-53	WRK35_ARATH; Probable WRKY transcription factor 35
Swissprot	Q9SA80	9e-53	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A0D9W1K2	0.0	A0A0D9W1K2_9ORYZ; Uncharacterized protein
STRING	LPERR03G35420.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	7e-55	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]