PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G35390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 508aa    MW: 55548.6 Da    PI: 4.6787
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G35390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35391302102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  LPERR03G35390.1  39 FLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 123
                      9*********************99*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  LPERR03G35390.1 124 TINRRKP 130
                      *****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3932123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3634128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-6135128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3139128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEAGVAAAAA AGAVTTAVAP PAAAAAVSNG VSATAPPPFL MKTYEMVDDP ATDAVVSWGP  60
GNNSFVVWNT PEFARDLLPK YFKHSNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH  120
LLKTINRRKP THGNSQVQQP QLPAAPVPAC VEVGKFGMEE EIEMLKRDKN VLMQELVRLR  180
QQQQTTDHQL QTLGKRLQGM EQRQQQMMSF LAKAMHSPGF LAQFVQQNEN SRRRIVATNK  240
KRRLPKQDGS LDSESASLDG QIVKYQPMIN EAAKAMLRKI LKLDPSHRFE SMGNSDNFLL  300
ENYMPAGQGF DSSSSTRNSG VTLAEVPANS GLPYVAAANS GLSAICSSST PQIQCPVVLD  360
NGIAKELQNM AAMPSVSKAV APGPNDIDIP EFPDLQDIVA EENVNTPVGG FQMPGPEGVF  420
PLPEEADDSV PIETDEIMYN DDTQKLPGII DSFWEQFLVA SPLSVDNDEV DSGVLDQKET  480
QQENGWTKVE NMANLTEQMG LLSSNHIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-263712818120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G35390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004300.0AK100430.1 Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence.
GenBankAK1061180.0AK106118.1 Oryza sativa Japonica Group cDNA clone:001-207-E07, full insert sequence.
GenBankAY3444850.0AY344485.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA, complete cds.
GenBankEU8469830.0EU846983.1 Oryza sativa Japonica Group clone KCS225D11 heat shock factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630421.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0D9W1J90.0A0A0D9W1J9_9ORYZ; Uncharacterized protein
STRINGLPERR03G35390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-125heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]