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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
LPERR03G34390.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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| Family |
C2H2 |
| Protein Properties |
Length: 354aa MW: 38200.5 Da PI: 6.2209 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G34390.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 23.4 | 1.6e-07 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cgk F+r nL+ H+r H
LPERR03G34390.1 145 HVCAVCGKGFKRDANLRMHMRGH 167
79*******************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MELCDDPDGS NKTMQADSHG GSEAAAAAGG EEVDATAVLT YLTFLEQKIG HLRGIISSTP 60
HPPPQIVSAE LSCIVLQLLS ISNNLAATRH GSDGDDTAVH AINKHDVISS DADDGEDAVS 120
PPAARGSSYE VVQIEKEEIL APHTHVCAVC GKGFKRDANL RMHMRGHGDE YKSAAALATS 180
PSPANATARR RFYSCPYIGC KRNREHKSFQ PLKTAACVKN HYRRSHCDKS FTCRRCNVKK 240
FSVLADLRTH EKHCGRDRWV CSCGTSFSRK DKLFGHVAVF DGHSPALPPD EYDDDDDDVT 300
TAAGSGQPLH GADLRCSSDI KGSMDDGRGS LSPMGLDYCE FDGIDLFAAA AFDF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC104487 | 4e-98 | AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence. |
| GenBank | AK287605 | 4e-98 | AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence. |
| GenBank | AP014959 | 4e-98 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| Publications
? help Back to Top |
- Kobayashi Y, et al.
Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
Plant Physiol., 2013. 163(1): p. 180-92
[PMID:23839867] - Yokosho K,Yamaji N,Ma JF
Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
Plant Cell Physiol., 2014. 55(12): p. 2077-91
[PMID:25273892] - Geng X, et al.
LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
Plant J., 2017. 90(3): p. 491-504
[PMID:28181322] - Balzergue C, et al.
Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
Nat Commun, 2017. 8: p. 15300
[PMID:28504266] - Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
Front Plant Sci, 2017. 8: p. 822
[PMID:28567051] - Jiang F, et al.
Identification and characterization of suppressor mutants of stop1.
BMC Plant Biol., 2017. 17(1): p. 128
[PMID:28738784] - Daspute AA, et al.
Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
Front Plant Sci, 2017. 8: p. 1358
[PMID:28848571] - Sharma A,Wai CM,Ming R,Yu Q
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
Genome Biol Evol, 2017. 9(9): p. 2170-2190
[PMID:28922793] - Zhang Y, et al.
The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
Front Plant Sci, 2018. 9: p. 118
[PMID:29491872]
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