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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G33240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 145aa MW: 15209.4 Da PI: 10.394 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H LPERR03G33240.1 49 FVCKTCSRAFPSFQALGGHRTSH 71 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.8e-05 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H LPERR03G33240.1 100 HECHICGQGFEMGQALGGHMRRH 122 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.11E-5 | 47 | 75 | No hit | No description |
Pfam | PF13912 | 8.5E-11 | 49 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.51 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.7E-6 | 99 | 126 | No hit | No description |
PROSITE profile | PS50157 | 10.512 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-10 | 100 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MTKHPRDVEA ISLSLTLSLF ADGVSTTGGG ERKRLRRGSS PAASGGGEFV CKTCSRAFPS 60 FQALGGHRTS HLRGRHGLAL GLATGKENPK KLQEKAAASH ECHICGQGFE MGQALGGHMR 120 RHREEAAAAA VAGVQAPPVL LELFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G33240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629272.1 | 7e-52 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D9W0S6 | 8e-99 | A0A0D9W0S6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G33240.1 | 1e-99 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-19 | C2H2 family protein |