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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G32900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29659.4 Da PI: 10.7038 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.2e-19 | 110 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr+++ +g+++AeIrdp + +r +lg+f+taeeAa+a++aa +l+g LPERR03G32900.1 110 SSYRGVRRRP-WGKFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 160 67********.**********8.....556**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.71E-21 | 110 | 168 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.56E-19 | 110 | 167 | No hit | No description |
Pfam | PF00847 | 3.5E-12 | 110 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-32 | 111 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 111 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 111 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGTNPSLLEL TAAAAPPPPP ARGRVVRILV RDADATDSSS SEDEVVARRQ QRRRGRKVKR 60 RVMEAGRRGE EEEGEAAAAA AAATGARRPA GXEDDKNNNS KEEGKKSTSS SYRGVRRRPW 120 GKFAAEIRDP HLRRRLWLGT FDTAEEAAAA YDAASVRLRG SSAATNFSSV RFYCSSLELA 180 KPTIPPPLPL PPKAVKPITL LVRPAKPTVL PRVKEEGESC GGQVKEEGSS CAVQALPAEP 240 MWTMISGKRK KRSGCGTRVR AFHAVTACME EIGGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-19 | 111 | 167 | 5 | 62 | ATERF1 |
3gcc_A | 7e-19 | 111 | 167 | 5 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G32900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628091.1 | 2e-95 | ethylene-responsive transcription factor CRF5 | ||||
TrEMBL | A0A0D9W0N3 | 0.0 | A0A0D9W0N3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G32900.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 3e-18 | ERF domain protein 10 |