PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G32900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 275aa    MW: 29659.4 Da    PI: 10.7038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G32900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.2e-19110160155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GVr+++ +g+++AeIrdp     +  +r +lg+f+taeeAa+a++aa  +l+g
  LPERR03G32900.1 110 SSYRGVRRRP-WGKFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 160
                      67********.**********8.....556**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-21110168IPR016177DNA-binding domain
CDDcd000181.56E-19110167No hitNo description
PfamPF008473.5E-12110160IPR001471AP2/ERF domain
SMARTSM003809.2E-32111175IPR001471AP2/ERF domain
PROSITE profilePS5103223.103111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-29111168IPR001471AP2/ERF domain
PRINTSPR003678.9E-11112123IPR001471AP2/ERF domain
PRINTSPR003678.9E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGTNPSLLEL TAAAAPPPPP ARGRVVRILV RDADATDSSS SEDEVVARRQ QRRRGRKVKR  60
RVMEAGRRGE EEEGEAAAAA AAATGARRPA GXEDDKNNNS KEEGKKSTSS SYRGVRRRPW  120
GKFAAEIRDP HLRRRLWLGT FDTAEEAAAA YDAASVRLRG SSAATNFSSV RFYCSSLELA  180
KPTIPPPLPL PPKAVKPITL LVRPAKPTVL PRVKEEGESC GGQVKEEGSS CAVQALPAEP  240
MWTMISGKRK KRSGCGTRVR AFHAVTACME EIGGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-19111167562ATERF1
3gcc_A7e-19111167562ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G32900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628091.12e-95ethylene-responsive transcription factor CRF5
TrEMBLA0A0D9W0N30.0A0A0D9W0N3_9ORYZ; Uncharacterized protein
STRINGLPERR03G32900.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-18ERF domain protein 10