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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G32000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 26285 Da PI: 7.6282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.9e-11 | 143 | 190 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq LPERR03G32000.1 143 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 190 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.17E-10 | 137 | 194 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-18 | 137 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.221 | 139 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-18 | 139 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 143 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDPAPTLAAE LWRPPHLGGG GARAAAVEAA ASGVTEQSNG NRGVDCGGGA GRRRQREAPA 60 PEDDSSRLVS TSGGGGGGQD LTDSEAKRFK ASKSSGDNGS LRTEAETNSR NASKSVDQNP 120 PQQEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKASVLD 180 EIINYIQALQ RQVEFLSMKL EAVNAHLNNG IEAFPSKDTP REYAQGSTPS EWLHMQIGGT 240 YERVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G32000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100177 | 0.0 | AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence. | |||
GenBank | HQ858847 | 0.0 | HQ858847.1 Oryza sativa Japonica Group isolate UT1610 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629323.1 | 1e-129 | transcription factor BHLH089-like | ||||
Swissprot | Q84T08 | 1e-130 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | A0A0D9W0A3 | 1e-180 | A0A0D9W0A3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G32000.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-64 | BIG PETAL P |
Publications ? help Back to Top | |||
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