PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G31720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 419aa    MW: 44031.7 Da    PI: 9.4356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G31720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30344402259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++++tYe+eHnh 
  LPERR03G31720.1 344 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLIVTYENEHNHA 402
                      69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.9E-14295341IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.9E-33335404IPR003657WRKY domain
PROSITE profilePS5081131.341338404IPR003657WRKY domain
SuperFamilySSF1182904.58E-27341404IPR003657WRKY domain
SMARTSM007741.1E-37343403IPR003657WRKY domain
PfamPF031061.0E-26345401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEAVEEANMA AVESSKKLVA ILSKSGDPFR LMAAVAETDE AVSRFGKVVT ILSNRVGHAR  60
ARLGKRRSSP SPAVDLACLM DHPFAAAANC PAVLSNGQFL VSVSPPAAMS PSPATANSPA  120
VPSNGRLFVS ASPPVLTYPA TAAAVDRSLF LETPLLDLNS CGGAPPAPAM AAAKKSSNLG  180
GAPMANSSSS CANHIQFQPP PTKNHHQNQH QQQQMKSFQF EQAMKPTGGE NKFHIEMMPT  240
SGGGGGGGGG KEVISFSFDN NSVCTSSAAT SFFTSISSQL ISMSDGGATN SAAKKQSCGR  300
KSAAGSGDDD DAGGKCHCPK KKKPREKKVV TVPAISDKVA DIPSDNYSWR KYGQKPIKGS  360
PHPRGYYRCS SKKDCPARKH VERCRSDPAM LIVTYENEHN HAQPLDISLV QQATTNPQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-203414041274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G31720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8352021e-124CT835202.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651909.11e-154PREDICTED: protein WRKY1-like
TrEMBLA0A0D9W0690.0A0A0D9W069_9ORYZ; Uncharacterized protein
STRINGLPERR03G31720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-38WRKY DNA-binding protein 21