PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G31640.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 297aa    MW: 31391.4 Da    PI: 6.8051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G31640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08147191554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  LPERR03G31640.1 147 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 191
                      99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-15140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-10140196No hitNo description
PROSITE profilePS5088815.77142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14144202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6147191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGHPPPQQG TGAEDDFFDQ FFSLTSPFSS GAATRPAAGD QPFSLALSLD AAAAAEASGS  60
GKRVGLVGDG AEGGGSKADR ETVQLPGLFP PVFGGGGGVQ PPHLRPSPPT QVFHAQQSKQ  120
GGAAVGPQPP APRPKVRARR GQATDPHSIA ERLRRERIAE RMRALQELVP NTNKTDRAAM  180
LDEILDYVKF LRLQVKVLSM SRLGGAGAVA QLVADIPLSV KGEASDSGGN QQIWEKWSTD  240
GTERQVAKLM EDDIGAAMQF LQSKALCMMP ISLAMAIYDT QHTQDGQPVK HEPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G31640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633087.11e-174transcription factor UNE12 isoform X1
SwissprotO227683e-74UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D9W0590.0A0A0D9W059_9ORYZ; Uncharacterized protein
STRINGLPERR03G31640.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]