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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G30650.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 408aa MW: 43319.4 Da PI: 5.3686 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G30650.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 49 | 1.1e-15 | 210 | 268 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksLq 55
hn ErrRRdriN+++ L++l+P++ + +Ka+iL +A+eY+ksLq
LPERR03G30650.1 210 VHNLSERRRRDRINEKMRALQDLIPHCNkvraspwTDTVMLTDKASILDEAIEYLKSLQ 268
6*************************888****976666669****************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009704 | Biological Process | de-etiolation |
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway |
GO:0010017 | Biological Process | red or far-red light signaling pathway |
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MANRRTDNEL VELLWHNGAV VAQPRAAAVA SSVCGGGGGG GSVLTGDCDG EEEETAAWFP 60 DTLDDVYTQL WHSVAGAGAG DAFPATAGPS SHHPPPPPDL PPPAMRSGIG SSWTGDICST 120 FCGSNHIPET AATEPGAAAL PPASTRDGAA TSSSAGSGLP SESASAHKRK GRGIEDSDSR 180 SEDAQCEATE ETKSSSRRYG SKRRTRAAEV HNLSERRRRD RINEKMRALQ DLIPHCNKVR 240 ASPWTDTVML TDKASILDEA IEYLKSLQMQ VQIMWMTTGM APMMFPGAHQ FMPTMAVGMN 300 SACMPTAQGL SQMPRLPYMN HPLPNHIPIN SPPAMNPMSV ANQMQSIQLR EASNAFLHPD 360 GWQTVPPQVS GPYSSGPQVA QQDQILEVPA NTVLPNSGAE QPPVSDGI
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 201 | 218 | KRRTRAAEVHNLSERRRR |
2 | 214 | 219 | ERRRRD |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CT829014 | 0.0 | CT829014.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232P10, full insert sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] - Todaka D, et al.
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]
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