PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G29580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 103aa MW: 11455.3 Da PI: 10.2686 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 29 | 69 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN ++ L++l+P+ +K++ +++Le+Av+Y+k Lq LPERR03G29580.1 29 RKRRERINGRLKILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 69 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.577 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-15 | 19 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-13 | 23 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.41E-12 | 28 | 73 | No hit | No description |
Pfam | PF00010 | 1.0E-8 | 29 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MEDHVGGGGN GKTPARRGSA TGAQSLYARK RRERINGRLK ILQKLVPNGT KVDISTMLEE 60 AVHYVKFLQL QIKMLSSDEL WMYAPIAYNG MDLGIDLNIS PPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G29580.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631804.1 | 4e-55 | transcription factor BHLH089-like isoform X1 | ||||
Refseq | XP_025879771.1 | 4e-55 | transcription factor BHLH089-like isoform X1 | ||||
Swissprot | Q84WK0 | 1e-47 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | A0A0D9VZD3 | 4e-70 | A0A0D9VZD3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G29580.1 | 6e-71 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4310 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 5e-50 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Publications ? help Back to Top | |||
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