PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G29570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 267aa    MW: 27865.2 Da    PI: 7.9359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G29570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0591113123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ CgksFs+   L  H  +H
  LPERR03G29570.1  91 FKCSVCGKSFSSYQALGGHKTSH 113
                      89**********99998888777 PP
2zf-C2H212.60.00041163185123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k F++   L  H r+H
  LPERR03G29570.1 163 HKCSICHKEFPTGQALGGHKRKH 185
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004691113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.86391118IPR007087Zinc finger, C2H2
PfamPF139125.8E-1391114IPR007087Zinc finger, C2H2
SuperFamilySSF576673.21E-1091113No hitNo description
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576673.21E-10158185No hitNo description
PfamPF139121.3E-12162187IPR007087Zinc finger, C2H2
SMARTSM003550.038163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEALHAAVVE EEQQHHEEAV VTAASSSATS GEEGGHLPQG WAKRKRSRRQ RSEEENLALC  60
LLMLARGGHH RVHAPPPLAA SASAAAVAAE FKCSVCGKSF SSYQALGGHK TSHRIKLPTP  120
PAAPFLAPAP IAAVLPPAAE DREPATSSTA ASSDGAATSN RVHKCSICHK EFPTGQALGG  180
HKRKHYDGGV GSGAGAASST ELLATVAAES EVGSSGNGHS AARAFDLNLP AVPEFVWRPC  240
SKGKKIWEDE EEVQSPLAFK KPRLLTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G29570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907130.0AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.11e-119zinc finger protein 1
SwissprotQ424301e-110ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0D9VZD20.0A0A0D9VZD2_9ORYZ; Uncharacterized protein
STRINGLPERR03G29570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-26zinc-finger protein 2