PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G28970.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 567aa    MW: 64124.1 Da    PI: 9.9407
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G28970.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
  LPERR03G28970.2 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVAIVLFSHAGRLYQFSS 59
                     9***********************************************96 PP
2SRF-TF95.22.8e-30331381151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gklye+++
  LPERR03G28970.2 331 KRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIIFSTKGKLYEFAT 381
                      79***********************************************86 PP
3K-box87.82.2e-29771743100
            K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +++ ++ ++ ++++ +qe+ +Lk+++e Lq++qR+llGedL +L  +eL qLe q+ + lk+iR +K+++ll+++ +l++ke++lq++n+ L++
  LPERR03G28970.2  77 SQDATAPTSDDMQNNYQEYVNLKAQVEVLQHSQRNLLGEDLAPLGTNELDQLEGQVVRTLKQIRLRKTKVLLDELCDLKRKEQMLQDANRVLKR 170
                      455566788899********************************************************************************** PP

            K-box  97 klee 100
                      kl+e
  LPERR03G28970.2 171 KLDE 174
                      *986 PP
4K-box105.75.4e-35400495499
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +   s+e++++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+
  LPERR03G28970.2 400 KVLISAESETQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKE 493
                      555667888999********************************************************************************99 PP

            K-box  98 le 99 
                      l 
  LPERR03G28970.2 494 LV 495
                      85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.866161IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.00E-37279No hitNo description
SuperFamilySSF554556.93E-30283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2585172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.33388178IPR002487Transcription factor, K-box
PROSITE profilePS5006632.927323383IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-40323382IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-33324411IPR002100Transcription factor, MADS-box
PROSITE patternPS003500325379IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-30325345IPR002100Transcription factor, MADS-box
CDDcd002652.30E-38327398No hitNo description
PfamPF003193.8E-25332379IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-30345360IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-30360381IPR002100Transcription factor, MADS-box
PfamPF014861.4E-29406494IPR002487Transcription factor, K-box
PROSITE profilePS5129717.855410500IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVAIVLFSH AGRLYQFSSS  60
SNMLKTLERY QRYIYASQDA TAPTSDDMQN NYQEYVNLKA QVEVLQHSQR NLLGEDLAPL  120
GTNELDQLEG QVVRTLKQIR LRKTKVLLDE LCDLKRKEQM LQDANRVLKR KLDEIGVEAA  180
PTQPMWNGNC SNGDGGGRGG GVFSSEPPQP EHFFQGLGFH AVDVNQPPAP PPGACLYELF  240
VSNVTSKYKN RRRSTSPPPS LAGVLRQAAA VASVIVSRRC HHRWVRKTEE NAVPPSVFVA  300
DRRNSVDLAR SRGRGEGGGG RSMGRGKVQL KRIENKINRQ VTFSKRRAGL LKKANEISVL  360
CDAEVALIIF STKGKLYEFA TDSCMDKILE RYERYSYAEK VLISAESETQ GNWCHEYRKL  420
KAKVETIQKC QKHLMGEDLE SLNLKELQQL EQQLENSLKH IRSRKSQLML ESINELQRKE  480
KSLQEENKVL QKELVEKQKV QKQQVQWDQT QPQTSSSSSS FMMREALPTT NISNYTAAAG  540
ERAEDVAGQA QQVRIGLPPW MLNHING
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-191396173MEF2 CHIMERA
6byy_B4e-191396173MEF2 CHIMERA
6byy_C4e-191396173MEF2 CHIMERA
6byy_D4e-191396173MEF2 CHIMERA
6bz1_A4e-191396173MEF2 CHIMERA
6bz1_B4e-191396173MEF2 CHIMERA
6bz1_C4e-191396173MEF2 CHIMERA
6bz1_D4e-191396173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G28970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3324780.0AY332478.1 Oryza sativa (japonica cultivar-group) MADS box protein (AGL10) mRNA, complete cds.
GenBankFJ7509350.0FJ750935.1 Oryza sativa clone KCS096F11 MADS-box transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631034.11e-144MADS-box transcription factor 14 isoform X2
SwissprotQ10CQ11e-145MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLA0A0D9VZ430.0A0A0D9VZ43_9ORYZ; Uncharacterized protein
STRINGLPERR03G28970.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]