PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G26990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 578aa    MW: 62259.2 Da    PI: 5.65
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G26990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.91.7e-1062095783374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                      + Ll++ +a ++ d  la a La+++  a+ +gdp +Rla+yf+ ALa+rla       +  pps++++ +  ++e +  +k++++++P+ kf+
  LPERR03G26990.1 209 QSLLSVSRAAEA-DPGLAAAELATVRAAATDAGDPSERLAFYFADALARRLAC-----GSGAPPSAAPDARfaTDELTLCYKTLNDACPYSKFA 296
                      567777776554.88899999*******************************8.....3444444444333448999999************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp  g   + +l +t  rL++fA+ lgv+fef + + + 
  LPERR03G26990.1 297 HLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPaRIRITGVPSPFLGpqPAASLAATSTRLRDFAKLLGVDFEFVP-LLRP 389
                      ******************************************77666*********988888999************************.599* PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +++l+ +++ v+p+Ea+aVn++lql++ll +s +l     +vL+l kslsP vv++ e e+++n++ F++rf++al+yy ++f+sl++ + r+s
  LPERR03G26990.1 390 VNELDQSDFLVEPDEAVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRAGFVDRFANALSYYRSVFESLDVAMTRDS 480
                      *****************************88888877...****************************************************** PP

             GRAS 280 eerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsv 370
                       er+ vEr ++g++i+ +v   ega+r+er+   ++W+  +e +GF+pv+ls++a +qa+lll +++ +  y++ e   +++ l W++rpL++v
  LPERR03G26990.1 481 PERVRVERWMFGERIQRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVRLSNYARSQADLLLWNYDsKYKYSLVELPPAFLsLAWEKRPLLTV 574
                      *******************8356889*****************************************7778999999999988*********** PP

             GRAS 371 SaWr 374
                      SaWr
  LPERR03G26990.1 575 SAWR 578
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.659181556IPR005202Transcription factor GRAS
PfamPF035145.9E-104209578IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ RHHHHHLPPP MPMPPHHQSK HHHHHHQMPP  60
MPQAQGAAPS HGQIPAGLSY GGGAAASAAW PAGEHFFSDA FGAASAADAV FDLAAAADFD  120
SDGWMESLIG DAPFQDSDLE RLIFTTTPPP PPPPPVPSPS PTHAAAAAAA AARPESTPAL  180
LPQAAAATTQ AACSSPSSAD ASCSSPILQS LLSVSRAAEA DPGLAAAELA TVRAAATDAG  240
DPSERLAFYF ADALARRLAC GSGAPPSAAP DARFATDELT LCYKTLNDAC PYSKFAHLTA  300
NQAILEATGA ATKIHIVDFG IVQGIQWAAL LQALATRPEG KPARIRITGV PSPFLGPQPA  360
ASLAATSTRL RDFAKLLGVD FEFVPLLRPV NELDQSDFLV EPDEAVAVNF MLQLYHLLGD  420
SDELVRRVLR LAKSLSPAVV TLGEYEVSLN RAGFVDRFAN ALSYYRSVFE SLDVAMTRDS  480
PERVRVERWM FGERIQRAVG PEEGADRTER MAGSSEWQTL MEWCGFEPVR LSNYARSQAD  540
LLLWNYDSKY KYSLVELPPA FLSLAWEKRP LLTVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.02045781375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G26990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650515.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A0D9VYD10.0A0A0D9VYD1_9ORYZ; Uncharacterized protein
STRINGLPERR03G26990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-135GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]