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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
LPERR03G25950.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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| Family |
TCP |
| Protein Properties |
Length: 361aa MW: 38658.9 Da PI: 7.0122 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G25950.1 | genome | OGE | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 155.6 | 2.8e-48 | 97 | 257 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas...nsssg. 88
aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++++ss c + +sss s++ +
LPERR03G25950.1 97 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSDDASSV-VCedDGGSSSLSVDaaaG---Sk 186
589**************************************************************55444.554322333333333330...13 PP
TCP 89 ......................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
k++++aa++k++++ ++++l + + esrakar+rarertrek+r+++++
LPERR03G25950.1 187 hhtntnnppgaaaegkkpaaaaKSRRAAATPKPPRRLSNAHLPVPDkESRAKARERARERTREKNRMRWVT 257
34445567888899999999977777777888888888888777666*********************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MDIPLYQQLQ LTPPSPPKPA IDHHQSSFFY YSPSFAAAAA AAATADETIG SPPVMLHPFM 60
DIEQQQQQPD QPQQQTATAV EDVAAGAGAA DILDGFAAAR KDRHSKICTA GGMRDRRMRL 120
SLDVARKFFA LQDMLGFDKA SKTVQWLLNM SKAAIREIMS DDASSVVCED DGGSSSLSVD 180
AAAGSKHHTN TNNPPGAAAE GKKPAAAAKS RRAAATPKPP RRLSNAHLPV PDKESRAKAR 240
ERARERTREK NRMRWVTLAS AISVEQHAAT ADKSPGAASP NNLQQMSAEL EEGSSSTLHN 300
SGRMQEISVA SEASDDVIMA FAHGGGAYGG GGDSSNYYQQ QPQDQWELGG VVFASSRHHH 360
Y
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB088343 | 1e-98 | AB088343.1 Oryza sativa Japonica Group OsTB1 gene for teosinte branched1 protein, complete cds. |
| GenBank | AB491555 | 1e-98 | AB491555.1 Oryza nivara tb1 gene for teosinte branched 1, complete cds, strain: W0106. |
| GenBank | AB491556 | 1e-98 | AB491556.1 Oryza rufipogon tb1 gene for teosinte branched 1, complete cds, strain: W1294. |
| GenBank | AB491557 | 1e-98 | AB491557.1 Oryza barthii tb1 gene for teosinte branched 1, complete cds, strain: W0652. |
| GenBank | AC091775 | 1e-98 | AC091775.10 Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence. |
| GenBank | AF322143 | 1e-98 | AF322143.1 Oryza sativa teosinte branched1 protein (tb1) gene, partial cds. |
| GenBank | AK107083 | 1e-98 | AK107083.1 Oryza sativa Japonica Group cDNA clone:002-121-G01, full insert sequence. |
| GenBank | AP014959 | 1e-98 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | AY043215 | 1e-98 | AY043215.1 Oryza sativa teosinte branched1 protein (tb1) mRNA, complete cds. |
| GenBank | AY286002 | 1e-98 | AY286002.1 Oryza sativa (indica cultivar-group) teosinte-branching 1 (TB1) gene, complete cds. |
| GenBank | CP012611 | 1e-98 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
| Publications
? help Back to Top |
- Lukens L,Doebley J
Molecular evolution of the teosinte branched gene among maize and related grasses.
Mol. Biol. Evol., 2001. 18(4): p. 627-38
[PMID:11264415] - Takeda T, et al.
The OsTB1 gene negatively regulates lateral branching in rice.
Plant J., 2003. 33(3): p. 513-20
[PMID:12581309] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Arite T, et al.
DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
Plant J., 2007. 51(6): p. 1019-29
[PMID:17655651] - Lewis JM, et al.
Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
Plant Cell Rep., 2008. 27(7): p. 1217-25
[PMID:18392625] - Minakuchi K, et al.
FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.
Plant Cell Physiol., 2010. 51(7): p. 1127-35
[PMID:20547591] - Mondragón-Palomino M,Trontin C
High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.
Ann. Bot., 2011. 107(9): p. 1533-44
[PMID:21444336] - Xia K, et al.
OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.
PLoS ONE, 2012. 7(1): p. e30039
[PMID:22253868] - Guo S, et al.
The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
Nat Commun, 2013. 4: p. 1566
[PMID:23463009] - Byeon Y,Back K
An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield.
J. Pineal Res., 2014. 56(4): p. 408-14
[PMID:24571270] - Yano K, et al.
Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.
Mol Plant, 2015.
[PMID:25381289] - Chen Z,Gao X,Zhang J
Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway.
Plant Cell Rep., 2015. 34(5): p. 767-81
[PMID:25604991] - Yano K, et al.
Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.
Mol Plant, 2015. 8(2): p. 303-14
[PMID:25616386] - Jung H,Lee DK,Choi YD,Kim JK
OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.
Plant Sci., 2015. 236: p. 304-12
[PMID:26025543] - Li S
The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development.
Plant Signal Behav, 2015. 10(7): p. e1044192
[PMID:26039357] - Yang X, et al.
Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae.
Plant Physiol., 2015. 169(3): p. 2138-51
[PMID:26351309] - De Paolo S,Gaudio L,Aceto S
Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica.
Sci Rep, 2015. 5: p. 16265
[PMID:26531864] - Álvarez-Salgado E,Arredondo-Peter R
Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth.
F1000Res, 2015. 4: p. 1053
[PMID:26973784] - Li X, et al.
MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.
Sci Rep, 2016. 6: p. 32158
[PMID:27574184]
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