PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRF

Protein Properties

Length: 493aa MW: 55037.8 Da PI: 9.8823

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G24200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75	8.1e-24	221	265	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+ LPERR03G24200.1 221 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 265 79****************************************997 PP
2	QLQ	57	6e-20	162	197	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll i+k LPERR03G24200.1 162 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 197 9******************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.6E-11	161	197	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.762	162	197	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.1E-14	162	195	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.803	221	265	IPR014977	WRC domain
Pfam	PF08879	4.5E-20	222	264	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MKGLLLFKGH PPSLSLVSQR ATIHISPHFL PPRKHTTTHH SLSPLKAEAV KPQCPQQCSP 60 PPPVLLPSCP PKMFADFSAA MELGEVLGLH GLTVPSTKES DLSIIKRATS FTQAAAAASY 120 PSPFLDEQKM LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY 180 LNAKAPIPSS LLISISKSFK SSVNRMSWRP LYQGFPNADS DPEPGRCRRT DGKKWRCSKE 240 AMADHKYCER HINRNRHRSR KPVENQSRKT VKETPCAGSL TSPVVQGSFK KAKVNEMKPG 300 SVSCWTDSLN RTMASKEKGN KAAEENNAPL MNLTNQQPTL SLLSQLKQQN KAEKFLDSEP 360 ISSNTMLKPW ESSNQQSNKN IPFTKVHDRG CLQSVLQNFS PPKDEKMGYQ KTKDSNAIPV 420 PSNFYSTPEG PCVSCHTSNM VQMQEDSISS SWEMPQGGPL GEILTNSKNT DDSTMKPEAR 480 PYGWLLNLED HAM

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MKGLLLFKGH PPSLSLVSQR ATIHISPHFL PPRKHTTTHH SLSPLKAEAV KPQCPQQCSP  60
PPPVLLPSCP PKMFADFSAA MELGEVLGLH GLTVPSTKES DLSIIKRATS FTQAAAAASY  120
PSPFLDEQKM LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY  180
LNAKAPIPSS LLISISKSFK SSVNRMSWRP LYQGFPNADS DPEPGRCRRT DGKKWRCSKE  240
AMADHKYCER HINRNRHRSR KPVENQSRKT VKETPCAGSL TSPVVQGSFK KAKVNEMKPG  300
SVSCWTDSLN RTMASKEKGN KAAEENNAPL MNLTNQQPTL SLLSQLKQQN KAEKFLDSEP  360
ISSNTMLKPW ESSNQQSNKN IPFTKVHDRG CLQSVLQNFS PPKDEKMGYQ KTKDSNAIPV  420
PSNFYSTPEG PCVSCHTSNM VQMQEDSISS SWEMPQGGPL GEILTNSKNT DDSTMKPEAR  480
PYGWLLNLED HAM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G24200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058659	0.0	AK058659.1 Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650403.1	0.0	PREDICTED: growth-regulating factor 9
Swissprot	Q9FRG8	0.0	GRF9_ORYSJ; Growth-regulating factor 9
TrEMBL	A0A0D9VXB9	0.0	A0A0D9VXB9_9ORYZ; Uncharacterized protein
STRING	LPERR03G24200.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13124	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	5e-37	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]