PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G24120.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 315aa    MW: 35018.4 Da    PI: 6.3195
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G24120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.6e-092292622255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  LPERR03G24120.1 229 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 262
                      69*****************************885 PP
2ELK35.81.7e-12182203122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +Ll+KYsgyL+sL+ E+s
  LPERR03G24120.1 182 ELKSHLLNKYSGYLSSLWRELS 203
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-2256100IPR005540KNOX1
PfamPF037906.5E-225798IPR005540KNOX1
SMARTSM012565.7E-27105156IPR005541KNOX2
PfamPF037913.9E-22110155IPR005541KNOX2
SMARTSM011884.0E-7182203IPR005539ELK domain
PfamPF037891.9E-9182203IPR005539ELK domain
PROSITE profilePS5121310.353182202IPR005539ELK domain
PROSITE profilePS5007112.455202265IPR001356Homeobox domain
SuperFamilySSF466892.99E-18203274IPR009057Homeodomain-like
SMARTSM003899.5E-12204269IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-25207266IPR009057Homeodomain-like
CDDcd000863.50E-11211265No hitNo description
PfamPF059206.7E-16222261IPR008422Homeobox KN domain
PROSITE patternPS000270240263IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEQVPLLAPD SKAATSPLCL TLDNPTSTST SPATAPAASP AALEPSRQSY HERETDAIKA  60
KIMSHPLYPA LLRAFIDCQK VGAPPEVVGR LSALAGELDS PSEDRRHEQS SDPELDEFME  120
TYIDMLVSYR QDLTRPIQEA DQFFRNMEAQ IDSFTLDDQE TTAGDMSVGL PEITSPCAED  180
KELKSHLLNK YSGYLSSLWR ELSKKKKKGK LPRDARQKLL HWWQLHYRWP YPSELEKAAL  240
AESTGLDAKQ INNWFINQRK RHWKPTPPAM EYRSLQLPAA NYGAGASTSS SSAAVRGMEG  300
QHFTGGGSVY PRGAP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G24120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950031e-150HQ695003.1 Oryza sativa fused compound leaf 1 (FCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628832.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX70.0KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A0D9VXA80.0A0A0D9VXA8_9ORYZ; Uncharacterized protein
STRINGLPERR03G24120.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-78KNOTTED-like from Arabidopsis thaliana