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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G23220.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
G2-like |
Protein Properties |
Length: 592aa MW: 64775.4 Da PI: 8.6971 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G23220.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 44 | 4.8e-14 | 373 | 420 | 4 | 51 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
lrW+ +LH+ Fveav+ G ++ + k+ +e+m+v gL +++kSHLQ
LPERR03G23220.1 373 LRWSDDLHKIFVEAVAYQGEAKPTAVKETMEAMGVTGLKTQNIKSHLQ 420
89****************98888889*********************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 592 aa
Download sequence Send
to blast |
MAATAAHLPL RAPAQAGLAP LRPSSCSAAR ARFSLRPAVR RIAARGGRKL VGIRAEALPG 60 GGWVARREPM VPPYNVLITG STKGIGYALA KEFLKAGDNV IICSRSAERV ESAVNDLKME 120 FGEQHVWGIV CDVREGKDVK ALVDFARDKM KYIDIWINNA GSNAYSYKPL VETSDEALME 180 VITTNTLGLM ICCREAINMM RNQPRGGHVF NIDGAGSDGR PTPRFAAYGA TKRSVVHLTK 240 SLQAELQMNE VNNVMVHNLS PGMVTTDLLM SGATTKQAKF FINILAEPPN VVADYLVPNI 300 RAIPANQSMK PTYIRFLTGL KAYSRIFSRI AFGARRNKIM SNSKSAQDND ASYMSSILAS 360 RIIWAMQPTR SYLRWSDDLH KIFVEAVAYQ GEAKPTAVKE TMEAMGVTGL KTQNIKSHLQ 420 IPFEARRNPC RRRLAAAHVA SSSQPTSPAR RRWQISATSG CLCTTSGCLC LCYSSLVGPK 480 IQLGLAVATT ATLAAGDAVA PPGHWSRTSE MVRDNDAVMA EMEMVNNLLM DDDIEMVETN 540 FSVDDVQTME KELMNELKAM EHNSEISDSA LDEYMDNLAN YAFDLTMTSS AA
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5ojg_A | 2e-17 | 77 | 268 | 14 | 198 | Dehydrogenase/reductase SDR family member 4 |
5ojg_B | 2e-17 | 77 | 268 | 14 | 198 | Dehydrogenase/reductase SDR family member 4 |
5oji_A | 2e-17 | 77 | 268 | 14 | 198 | Dehydrogenase/reductase SDR family member 4 |
5oji_B | 2e-17 | 77 | 268 | 14 | 198 | Dehydrogenase/reductase SDR family member 4 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Required for chlorophyll b degradation. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB255026 | 0.0 | AB255026.1 Oryza sativa Japonica Group NOL1 mRNA for short-chain dehydrogenase/reductase NOL1, complete cds. |
GenBank | AK287869 | 0.0 | AK287869.1 Oryza sativa Japonica Group cDNA, clone: J065203M24, full insert sequence. |