 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR03G22960.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
YABBY |
| Protein Properties |
Length: 193aa MW: 21984.1 Da PI: 9.7665 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G22960.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 231.5 | 2e-71 | 8 | 168 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntila.....vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93
++e+vCyv+CnfCntila vsvPs+s++++vtvrCGhCtsllsvnl+ q l+a+++ + +e lk+++ ++++n++++ s+s
LPERR03G22960.1 8 PAPEHVCYVHCNFCNTILAyryprVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPAVED-------PFQESLKMHNISFRENYSEYGSSS 94
579***************8777789***********************************996.......899********************* PP
YABBY 94 tsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++ ++ ++ s+n+ ++ + +r PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
LPERR03G22960.1 95 KYGRVPMMfSRNDPGHMLH----VRTPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 168
****999879999999997....899**************************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:1902183 | Biological Process | regulation of shoot apical meristem development |
| GO:2000024 | Biological Process | regulation of leaf development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 193 aa
Download sequence Send
to blast |
MSAQIALPAP EHVCYVHCNF CNTILAYRYP RVSVPSNSML NIVTVRCGHC TSLLSVNLRG 60
LIQSLPAVED PFQESLKMHN ISFRENYSEY GSSSKYGRVP MMFSRNDPGH MLHVRTPEKR 120
QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH FPNIHFGLGS HESSKKLDEA 180
IGAPSPQKIQ RLY
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB274014 | 0.0 | AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds. |
| GenBank | AF098753 | 0.0 | AF098753.1 Oryza sativa clone FIL2 unknown mRNA. |
| GenBank | AK070479 | 0.0 | AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence. |
| GenBank | EU846982 | 0.0 | EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds. |
