PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22590.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 293aa    MW: 32204.6 Da    PI: 5.1081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-08958246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +rW+ eE+  l  +++++G g W +I +          R+  ++k++w++
  LPERR03G22590.1  9 LRWSLEEEAALSAGIAKHGVGKWQAILEDSEfsstlWYRSNVNLKDKWRN 58
                     79********************************9977**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-5762IPR001005SANT/Myb domain
PROSITE profilePS500906.9341060IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-91059IPR009057Homeodomain-like
SuperFamilySSF466891.79E-121062IPR009057Homeodomain-like
PfamPF002499.5E-61059IPR001005SANT/Myb domain
CDDcd116601.03E-171060No hitNo description
SuperFamilySSF467851.2E-883132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-984130IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.8E-687127IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAHRLVATLR WSLEEEAALS AGIAKHGVGK WQAILEDSEF SSTLWYRSNV NLKDKWRNMN  60
ATVITSLGHV KGKVTPKKIQ AIPKNAHKRL MNVIMEAIVN LNEPTGSQKI AIANYIEEEY  120
YIPSDFEHIL SIIYACNPTL QVNRKYTIAP SSSYWEEQNP KVLKLEDTQR ESQNIGSNDV  180
EILTKAQVDA ELARMASMTA EEAEAAAARA VEEAEAVMAE AKEAAREAEA AEADAQAAIA  240
FAEATLLEWK NRNVAHAKLD VASCYPKLLQ PSIAADAAFP PQTVAISICL TAI
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G22590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982335.19e-73single myb histone 6 isoform X1
SwissprotC0HIA31e-68SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0D9VWS00.0A0A0D9VWS0_9ORYZ; Uncharacterized protein
STRINGLPERR03G22590.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-35telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]