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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G22450.6 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 487aa MW: 51802.4 Da PI: 8.4834 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G22450.6 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 52.8 | 7.1e-17 | 293 | 339 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq
LPERR03G22450.6 293 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 339
6*************************8.....6******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0006783 | Biological Process | heme biosynthetic process |
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway |
GO:0009959 | Biological Process | negative gravitropism |
GO:0010100 | Biological Process | negative regulation of photomorphogenesis |
GO:0010161 | Biological Process | red light signaling pathway |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0015995 | Biological Process | chlorophyll biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0010313 | Molecular Function | phytochrome binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 487 aa
Download sequence Send
to blast |
MNQFVPDWSN MGDASRTLGD DDSLIELLWC NGHVVMQSQN HRKLPPRPPE KTPPPPPEDD 60 AGLWFPFAFA DSLEKDIFSD LFYEGPVAAP AATPATGDGK PMAAGDEDDD DKRGLMPPPK 120 STHASCSRQQ QQQTMSLVAD AGGGLSGLVR KRNSALGGGG GGASSSMVSA IGSSICGSNQ 180 VQAQVHHHPS AVGSANAVPT VASSSGRSSC RFGVTATAME TTTTEPASGS NRSSRSKRKR 240 VLLLDTTTED YSESLSDDGG ESESVAAAAA GLLARKPPPK LTTAGRRSRA AEVHNLSERR 300 RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QVQMMWMGSG MAPPVMFPGV 360 HQYLPRMGVG IGAAMPRMPF MAAPQTVVPT PPVNPIQLCA PPPPPPQGTS RRRTAANTCQ 420 RRRTHAHYLG VNHLQPPPSQ GVGYYPLGAK ALQQNPAAIH VPTAPAMLPE NEPNRGSGMG 480 SFSSLYT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK060505 | 1e-112 | AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence. |