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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G22400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | CPP | ||||||||
Protein Properties | Length: 608aa MW: 65887.6 Da PI: 6.9675 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 27.7 | 5.6e-09 | 368 | 395 | 15 | 42 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNkeek 42 k+YC Cfaa+++Cs +C+C +C+N++++ LPERR03G22400.1 368 KRYCACFAAKVYCSGSCSCRGCFNNHSH 395 99**********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 12.072 | 359 | 448 | IPR005172 | CRC domain |
SMART | SM01114 | 1.4E-4 | 361 | 395 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-5 | 368 | 392 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MDPPGTPPAP PPAAGAGAAA DATSKDSPVF NFIENLPPIA ASKRLDAIPN GQLFKSSDLA 60 QTSSIFTSPQ LNSTKGSKIS IRNTSAQLSQ EGMSPYYHMT PIGTSSHIKL SGPATIASEN 120 CSIDRSLSQA NNYSPVNASV FPNSFPQHIE TSTDTLVSDK RQNTTGKADH AAAQKHAKVS 180 CFDHNGLDNM EQSISGTELY IDENIACNQN YLSTQCGSII VPTSDLTFQT EALLADTPKT 240 NNVMPRVSLL PITEANLENS RSRLFHGSAD CYVNSAVDIA HDYCTSQGKG VAANYVSGIP 300 FYQPQSQLVP DHQFCDTLEV PIDYMAMNHN HLASNTNKMN THPQNDCSSQ ATMPTNAGSS 360 GEENPKRKRY CACFAAKVYC SGSCSCRGCF NNHSHEETVL STRIQIESRN PLAFAPKVTR 420 AFGPGMEFGS GVGCSMSCRC ESCKNDFGIR KDTKEIEQVG QKKKAHPKEE QPEMGKHHAF 480 AETSVVLPTI SLSTTPSIES IRTLPLPASE CFNRLLSSPR TSQLYPPSNT DGWYPSGTYT 540 EMILGNDQSD MQHGDSSCIA SFKLLTPNKK RVSPLRTGNG LSPTCRSDKL RKYMPFRSLA 600 SDFNSELQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G22400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689982.1 | 0.0 | PREDICTED: uncharacterized protein LOC102721153 | ||||
TrEMBL | A0A0D9VWP0 | 0.0 | A0A0D9VWP0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G22400.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14774 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 3e-24 | Tesmin/TSO1-like CXC domain-containing protein |