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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G22350.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 219aa MW: 23430.9 Da PI: 7.5075 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G22350.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 38.9 | 1.5e-12 | 67 | 111 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h e+Er+RR+++N +f Lr +P+ +++Ka+ L Av YI +L
LPERR03G22350.1 67 HVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAVAYIADL 111
889**********************6.....4***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MDELVSPYSS SSSSFLAMVE LDVCEQWLVD DAWASHSPVS SDPAAAAAKT TRRRGRKAAA 60 GGPIIGHVEA ERQRREKLNR RFCDLRAAVP TVSRMDKASL LADAVAYIAD LRRRIDCLEA 120 EAKKGAAAHV AVAPDGLEIM MVGQEAASVR LTTTASQMQH APARMMCALR ALGLAVQHAS 180 VTRVASGATV QDVMVDVPSA LQDEGCLRAA LLLMLRHDV
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP006525 | 3e-45 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. |
GenBank | AP007254 | 3e-45 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. |
GenBank | AP014965 | 3e-45 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
GenBank | CP012617 | 3e-45 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |