PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21750.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 545aa    MW: 62004.8 Da    PI: 8.6135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-1934116997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ ++ +++p+kf++++ggk   s+t+ le+++g ++ vk+  +k+++++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  LPERR03G21750.1  34 NANFQHSMIIPNKFVDHFGGK--MSRTIELESPKGIVYIVKV--TKHKNKTVLQCGWEAFVDAHHIEENDSLLFHHIENSRF--EVLIL 116
                      4455677********888988..6779***************..*********************************99999..66665 PP
2B343.27.3e-14246342699
                      ..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
               B3   6 tpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                      ++s+v++  + lv+ k++a++h  +  +s+t+tl+   ++++W  ++ +rk + +y+l  + W +Fv +n+Lke D+++F l+ ++ ++f+ +v
  LPERR03G21750.1 246 KHSNVNSAhSSLVIAKHYASAHFPN--TSQTITLQRqGKNKKWHPRFHVRKDGAGYILHgRFWIDFVLDNRLKEEDICIFVLTkSTgRNFRATV 337
                      45555443378***********855..6779999885666*******989999998876478*******************9855578888888 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +v+r+
  LPERR03G21750.1 338 HVLRE 342
                      88875 PP
3B340.35.8e-134825414099
                      ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        ++++W+v+++ + + ++  lt GW++Fv++n+L+ +D+++F+l+++ ++ ++ v+++r+
  LPERR03G21750.1 482 EGKSKTWQVQMCPQIG-DAQKLTVGWRDFVHDNHLQMKDICLFQLMNNeRRLTMIVHIIRN 541
                      34679******54333.34789************************998999*****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2322121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-2123121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71726119IPR003340B3 DNA binding domain
SMARTSM010191.2E-929119IPR003340B3 DNA binding domain
CDDcd100171.25E-1834117No hitNo description
PfamPF023623.7E-1734115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-18233343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-17235341IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-16239341No hitNo description
PROSITE profilePS5086311.42242343IPR003340B3 DNA binding domain
PfamPF023621.6E-12244342IPR003340B3 DNA binding domain
SMARTSM010190.0021245343IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-14445542IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-13445542IPR015300DNA-binding pseudobarrel domain
CDDcd100174.23E-14450540No hitNo description
SMARTSM010190.0031452542IPR003340B3 DNA binding domain
PfamPF023626.4E-12453541IPR003340B3 DNA binding domain
PROSITE profilePS5086310.377480542IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MAGQGSHMKK PSDSSKRHAD HIDGKMKCFH MQMNANFQHS MIIPNKFVDH FGGKMSRTIE  60
LESPKGIVYI VKVTKHKNKT VLQCGWEAFV DAHHIEENDS LLFHHIENSR FEVLILDSDG  120
CEKVFTCAGI KRTYSLEERN ADSIDIASNT QDDTMESSES HSGSDSQRSK IAEFAATTYS  180
SGGSGEDVTE SSSSEDESSY ELDDPQTPLE PILSSGTKLS DAQKEKVAKL IRDIQPEIPL  240
YAAVMKHSNV NSAHSSLVIA KHYASAHFPN TSQTITLQRQ GKNKKWHPRF HVRKDGAGYI  300
LHGRFWIDFV LDNRLKEEDI CIFVLTKSTG RNFRATVHVL REKKPHSGPL LAPKRFDSRD  360
VRTKSKVTDA RRLSSTEGKR GTRGTSTTSV KKELDDDQRN NREGKHQEPH KFNDSERSSE  420
PYLLSDRASL NEVQISKVIE IAYSYQYEVP IYVTVMSKSN VGTDGQYIII FVKQFARRYL  480
PEGKSKTWQV QMCPQIGDAQ KLTVGWRDFV HDNHLQMKDI CLFQLMNNER RLTMIVHIIR  540
NNEKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLA0A0D9VWF80.0A0A0D9VWF8_9ORYZ; Uncharacterized protein
STRINGLPERR03G21750.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]