PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21720.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 1103aa    MW: 124362 Da    PI: 9.4174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21720.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-131232031197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ ++lp kfa+++gg+   s t++l+ ++   + v++  + + +++vl+ GW+ Fv a++++e+D + F++ g+s+f   v ++
  LPERR03G21720.3 123 DSRRSMILPDKFANHFGGN--ISGTIKLQAPNCILYVVEV--TVCMNKTVLKCGWEAFVAAHRIEENDYLFFSHLGNSRF--EVLIL 203
                      456679*******888988..6779***********9*99..999999****************************9999..66655 PP
2B3407e-133284111699
                      EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      lv++  +a+ h   ++es+ +tl+   ++++W  k+  rk +++ +l++ W++Fvk+n+L e D +vF  +++ s+f ++v v+r+
  LPERR03G21720.3 328 LVISSAYAAVHF--PHESRSVTLRRpYKSKKWHPKFYKRKDGSMNILRGYWSDFVKENRLLEQDLCVFVPTKDaSNFAFTVYVLRA 411
                      788888888886..346678999995677*******66777777*************************99999*******99986 PP
3B347.23.9e-155336072196
                      HH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  21 kfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++a++  ++ ++  + +l  +sg++W   + + + +s r +l +GW++Fv++n+L++gD+++F+l+ r++++l++ v
  LPERR03G21720.3 533 QYAAAVHLPDRR--QTVLLERSGKRWATVMHVnNARSTRRFLINGWSRFVRDNRLRVGDICLFELKTRERKKLTMAV 607
                      555555555444..4777888*****999977555555566777*********************977776666544 PP
4B341.72.1e-13639722798
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++d+++s  ++lp ++++++ggk   + t++le+++g  + v++    + +++vl+ GW+ Fv+a+++k++ +++F+++++s+f   v +++
  LPERR03G21720.3 639 TADSMRS--MILPSRYVNHFGGK--FPGTIKLESPNGILYVVEV--IEYMNKTVLQCGWEAFVDAHRIKQNNSLLFRHIENSRF--EVLILD 722
                      4555554..8*******888999..6669***************..999999***************************99999..666655 PP
5B346.37.4e-158319141699
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      lv++ ++a+ h   ++es t+tl+ +s  ++W  k+  rk +  ++l++ Wk+Fv++n L+e D+++F  ++  ++f+++v+++r+
  LPERR03G21720.3 831 LVISSRYASVHF--PRESATITLQMPSKrKKWHPKFYKRKDKTDHMLRGQWKNFVHDNCLQEEDICLFAPTKGgRNFTFTVHLLRA 914
                      799999999997..568889***9966659******66777778*************************886669**999999986 PP
6B331.82.5e-10105610984297
                       TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
                       +g  W++k+            +GW++Fv++n+L +gDf++F+l++ ++ ++ v+++
  LPERR03G21720.3 1056 KGMIWQIKY------------DGWRKFVHDNRLHVGDFCLFELKE-KKLTMEVHII 1098
                       444444444............8********************976.8888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-19111208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-16113208IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.955113206IPR003340B3 DNA binding domain
CDDcd100171.52E-14115204No hitNo description
SMARTSM010193.4E-6116206IPR003340B3 DNA binding domain
PfamPF023621.7E-11124202IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-16304411IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16306410IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-15312407No hitNo description
PROSITE profilePS5086311.209313412IPR003340B3 DNA binding domain
SMARTSM010190.0048319412IPR003340B3 DNA binding domain
PfamPF023626.7E-11328411IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-18502609IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16503609IPR015300DNA-binding pseudobarrel domain
CDDcd100175.54E-14508608No hitNo description
SMARTSM010190.0031515614IPR003340B3 DNA binding domain
PfamPF023624.3E-13529607IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238547611IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-19629726IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-16631724IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505631724IPR003340B3 DNA binding domain
CDDcd100173.30E-15633722No hitNo description
SMARTSM010192.0E-9634724IPR003340B3 DNA binding domain
PfamPF023622.3E-11638720IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-20808914IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-19808914IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-19815913No hitNo description
SMARTSM010190.0011815915IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898816915IPR003340B3 DNA binding domain
PfamPF023622.7E-13831914IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-1210081098IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.03310131101IPR003340B3 DNA binding domain
CDDcd100171.54E-1410261098No hitNo description
Gene3DG3DSA:2.40.330.102.1E-1210281098IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-810561098IPR003340B3 DNA binding domain
PROSITE profilePS508638.92410661101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MHFGSLSITR QWGPRVSPLL SSSSSSTLPP NLSVCLGGVA ITGCRRRRPS VAADAAVEWD  60
APRTPHGRHG LVRRLNHPLF RVGNSVEMAG SGSRMKKSCD CCQTYLGHLG GKMNCFLRRM  120
TADSRRSMIL PDKFANHFGG NISGTIKLQA PNCILYVVEV TVCMNKTVLK CGWEAFVAAH  180
RIEENDYLFF SHLGNSRFEV LILDSDGCEK VFSCTGIKNN CSMKEKSVDA VSISSSSCDD  240
TVQSSESEGF ARYQKGSFSR EDSPSEHDNV RSGDLQTSQE PYVLSRFHHL SESQKERVDE  300
LIKEIQPEIT VFVAVMRKFN VQLPTPFLVI SSAYAAVHFP HESRSVTLRR PYKSKKWHPK  360
FYKRKDGSMN ILRGYWSDFV KENRLLEQDL CVFVPTKDAS NFAFTVYVLR AAATYSRGGT  420
GVDRIGSSVR TIHVKSASDV IIREEPIEDD VSLENSRNGV SDESVESEDT EGPADPPCIV  480
PSASKSRLSS LQKNIVNEKV KSIQSKVPIY VAVMNKTNIG LSSCRSQLEF GAQYAAAVHL  540
PDRRQTVLLE RSGKRWATVM HVNNARSTRR FLINGWSRFV RDNRLRVGDI CLFELKTRER  600
KKLTMAVHTI SSKQSLAPVA KNTWNIWGGK MSYFLRQMTA DSMRSMILPS RYVNHFGGKF  660
PGTIKLESPN GILYVVEVIE YMNKTVLQCG WEAFVDAHRI KQNNSLLFRH IENSRFEVLI  720
LDTDDCEKVF SCAGIKNSSC AHDKAVDPAD ISGSSRDDTE QSSRSERSTR CKMDIFNDHK  780
NNVNWTEVSS SSEELAQKER VVAHIKDIQP QITVFVAVMK KCNLQSPAPY LVISSRYASV  840
HFPRESATIT LQMPSKRKKW HPKFYKRKDK TDHMLRGQWK NFVHDNCLQE EDICLFAPTK  900
GGRNFTFTVH LLRAAATHST GGTDICKIGS NHNGMNANMA SQVHLKEEPD DGENVSSESD  960
KHGVSHESQE SKDSASPSEP PYILSRARHQ LSQWQKKKVE AKVRAIQSKF PIYVAIIGRI  1020
SGGDGYGRIC QLELGSRYAA AHLPDTNHQT VVLQCKGMIW QIKYDGWRKF VHDNRLHVGD  1080
FCLFELKEKK LTMEVHIIFN LRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21720.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633049.10.0B3 domain-containing protein Os03g0619600
RefseqXP_015633050.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0D9VWF50.0A0A0D9VWF5_9ORYZ; Uncharacterized protein
STRINGLPERR03G21720.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]