![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR03G21720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 1651aa MW: 185996 Da PI: 9.4021 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.9 | 3.6e-13 | 123 | 203 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ ++lp kfa+++gg+ s t++l+ ++ + v++ + + +++vl+ GW+ Fv a++++e+D + F++ g+s+f v ++ LPERR03G21720.1 123 DSRRSMILPDKFANHFGGN--ISGTIKLQAPNCILYVVEV--TVCMNKTVLKCGWEAFVAAHRIEENDYLFFSHLGNSRF--EVLIL 203 456679*******888988..6779***********9*99..999999****************************9999..66655 PP | |||||||
2 | B3 | 34.9 | 2.7e-11 | 327 | 410 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 +lv+ ++a+ h ++es+ +tl+ ++++W ++ r+ ++ +l++ W+ Fv++n+++e+D++vF +++ +f ++v+++r LPERR03G21720.1 327 LLVIASRYAALHF--PHESRNVTLQRpCKSKKWHPTFYKRNEKSINILRGYWSYFVQDNRVQENDICVFVPTKDaGNFIFTVHLLR 410 5899999999997..446778999995677*******445555559************************9988899988888877 PP | |||||||
3 | B3 | 44.8 | 2.2e-14 | 527 | 605 | 18 | 95 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 + ++a+ ++ ++ + +l +sg+ W + + +++s r +l +GW++Fv++n+L++gD+++F+l+ ++ ++ ++ v+ LPERR03G21720.1 527 FGARYAAVVHLPDRR--QTVLLERSGKIWATVMHVkNGRSTRRFLINGWSRFVRDNRLRVGDICLFELKtHEtKKLTMAVH 605 455555444555433..4677889*****999966566666677778********************99444455555554 PP | |||||||
4 | B3 | 43.5 | 5.7e-14 | 649 | 729 | 10 | 96 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++++ +++p +f++++gg+ s t++le+++g + v++ + +++vl+ GW+ Fv+a++++e+D+++F+++++s+f +v + LPERR03G21720.1 649 ANSRRSMIMPDSFVNHFGGN--ISGTIKLESPNGILYVVEF--TEFMNKTVLKCGWEAFVDAHHIEENDSLLFRHIENSRF--KVLI 729 45667799******888988..6779***************..999999***************************99999..5544 PP | |||||||
5 | B3 | 39.3 | 1.2e-12 | 875 | 958 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 lv++ +a+ h ++es+ +tl+ ++++W k+ rk +++ +l++ W++Fvk+n+L e D +vF +++ s+f ++v v+r+ LPERR03G21720.1 875 LVISSAYAAVHF--PHESRSVTLRRpYKSKKWHPKFYKRKDGSMNILRGYWSDFVKENRLLEQDLCVFVPTKDaSNFAFTVYVLRA 958 788888888886..346678999995677*******66777777*************************99999*******99986 PP | |||||||
6 | B3 | 46.6 | 6.4e-15 | 1081 | 1155 | 21 | 96 |
HH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 21 kfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++a++ ++ ++ + +l +sg++W + + + +s r +l +GW++Fv++n+L++gD+++F+l+ r++++l++ v LPERR03G21720.1 1081 QYAAAVHLPDRR--QTVLLERSGKRWATVMHVnNARSTRRFLINGWSRFVRDNRLRVGDICLFELKTRERKKLTMAV 1155 555555555444..4777888*****999977555555566777*********************977776666544 PP | |||||||
7 | B3 | 41 | 3.4e-13 | 1187 | 1270 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++d+++s ++lp ++++++ggk + t++le+++g + v++ + +++vl+ GW+ Fv+a+++k++ +++F+++++s+f v +++ LPERR03G21720.1 1187 TADSMRS--MILPSRYVNHFGGK--FPGTIKLESPNGILYVVEV--IEYMNKTVLQCGWEAFVDAHRIKQNNSLLFRHIENSRF--EVLILD 1270 4555554..8*******888999..6669***************..999999***************************99999..666655 PP | |||||||
8 | B3 | 45.6 | 1.2e-14 | 1379 | 1462 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 lv++ ++a+ h ++es t+tl+ +s ++W k+ rk + ++l++ Wk+Fv++n L+e D+++F ++ ++f+++v+++r+ LPERR03G21720.1 1379 LVISSRYASVHF--PRESATITLQMPSKrKKWHPKFYKRKDKTDHMLRGQWKNFVHDNCLQEEDICLFAPTKGgRNFTFTVHLLRA 1462 799999999997..568889***9966659******66777778*************************886669**999999986 PP | |||||||
9 | B3 | 31.1 | 4.1e-10 | 1604 | 1646 | 42 | 97 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +g W++k+ +GW++Fv++n+L +gDf++F+l++ ++ ++ v+++ LPERR03G21720.1 1604 KGMIWQIKY------------DGWRKFVHDNRLHVGDFCLFELKE-KKLTMEVHII 1646 444444444............8********************976.8888888875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-19 | 111 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 113 | 206 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-16 | 113 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.64E-14 | 115 | 204 | No hit | No description |
SMART | SM01019 | 3.4E-6 | 116 | 206 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-11 | 124 | 202 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 304 | 411 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-16 | 305 | 411 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.11 | 312 | 412 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.90E-13 | 312 | 407 | No hit | No description |
PROSITE profile | PS50863 | 10.884 | 313 | 412 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-9 | 327 | 411 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-17 | 499 | 607 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-16 | 500 | 606 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.38E-15 | 505 | 592 | No hit | No description |
PROSITE profile | PS50863 | 12.026 | 510 | 608 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-4 | 510 | 610 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-12 | 522 | 607 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-20 | 639 | 739 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-17 | 639 | 733 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.224 | 640 | 733 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.60E-16 | 642 | 730 | No hit | No description |
SMART | SM01019 | 3.2E-9 | 643 | 733 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 649 | 728 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-16 | 851 | 958 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-16 | 853 | 957 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.28E-15 | 859 | 954 | No hit | No description |
PROSITE profile | PS50863 | 11.209 | 860 | 959 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0048 | 866 | 959 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-10 | 875 | 958 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-18 | 1050 | 1157 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-16 | 1051 | 1157 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-13 | 1056 | 1156 | No hit | No description |
SMART | SM01019 | 0.0031 | 1063 | 1162 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-13 | 1077 | 1155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.238 | 1095 | 1159 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.9E-19 | 1177 | 1274 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.505 | 1179 | 1272 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-16 | 1179 | 1272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.75E-15 | 1181 | 1270 | No hit | No description |
SMART | SM01019 | 2.0E-9 | 1182 | 1272 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-11 | 1186 | 1268 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.37E-18 | 1356 | 1462 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-19 | 1356 | 1462 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.56E-19 | 1363 | 1461 | No hit | No description |
SMART | SM01019 | 0.0011 | 1363 | 1463 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.898 | 1364 | 1463 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-13 | 1379 | 1462 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-12 | 1557 | 1646 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.033 | 1561 | 1649 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.71E-14 | 1574 | 1646 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-12 | 1576 | 1646 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.1E-8 | 1604 | 1646 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.924 | 1614 | 1649 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1651 aa Download sequence Send to blast |
MHFGSLSITR QWGPRVSPLL SSSSSSTLPP NLSVCLGGVA ITGCRRRRPS VAADAAVEWD 60 APRTPHGRHG LVRRLNHPLF RVGNSVEMAG SGSRMKKSCD CCQTYLGHLG GKMNCFLRRM 120 TADSRRSMIL PDKFANHFGG NISGTIKLQA PNCILYVVEV TVCMNKTVLK CGWEAFVAAH 180 RIEENDYLFF SHLGNSRFEV LILDSDGCEK VFSCTGIKNN CSMKEKSVDA VSISSSSCDD 240 TVQSSESEGF ARYQKGSFSR KDSPSEHESV DSGDLQTSQE PYTLSRFSYL SDVQKERVDA 300 LIQKIQPKIT VFVAIMRKSN VQLPAPLLVI ASRYAALHFP HESRNVTLQR PCKSKKWHPT 360 FYKRNEKSIN ILRGYWSYFV QDNRVQENDI CVFVPTKDAG NFIFTVHLLR AAATYSMGGT 420 GVDRIGSSVG ITHAMKSSSD IIVKEEPIEA DDVSLENSRN GVSEDSEDSK GPADPFYIVP 480 CKSRLSSLQK KIVKDKVRSI QSKVPLYVAL MKKTNVELTG RRCQLEFGAR YAAVVHLPDR 540 RQTVLLERSG KIWATVMHVK NGRSTRRFLI NGWSRFVRDN RLRVGDICLF ELKTHETKKL 600 TMAVHAISSS NQFEMAGSGS RMKKSCDCCQ RYLEHLDGKM NCFLRRMTAN SRRSMIMPDS 660 FVNHFGGNIS GTIKLESPNG ILYVVEFTEF MNKTVLKCGW EAFVDAHHIE ENDSLLFRHI 720 ENSRFKVLIL GSDDCEKVFS CAGIKNNCSI EEKSADPVSI SSSSCDDINT AQSSESEGSA 780 RYQKGNFSHR RKISKLASSS SSYGDSGEDS PSEHDNVRSG DLQTSQEPYV LSRFHHLSES 840 QKERVDELIK EIQPEITVFV AVMRKFNVQL PTPFLVISSA YAAVHFPHES RSVTLRRPYK 900 SKKWHPKFYK RKDGSMNILR GYWSDFVKEN RLLEQDLCVF VPTKDASNFA FTVYVLRAAA 960 TYSRGGTGVD RIGSSVRTIH VKSASDVIIR EEPIEADDVS LENSRNGVSD ESVESEDTEG 1020 PADPPCIVPS ASKSRLSSLQ KNIVNEKVKS IQSKVPIYVA VMNKTNIGLS SCRSQLEFGA 1080 QYAAAVHLPD RRQTVLLERS GKRWATVMHV NNARSTRRFL INGWSRFVRD NRLRVGDICL 1140 FELKTRERKK LTMAVHTISS KQSLAPVAKN TWNIWGGKMS YFLRQMTADS MRSMILPSRY 1200 VNHFGGKFPG TIKLESPNGI LYVVEVIEYM NKTVLQCGWE AFVDAHRIKQ NNSLLFRHIE 1260 NSRFEVLILD TDDCEKVFSC AGIKNSSCAH DKAVDPADIS GSSRDDTEQS SRSERSTRCK 1320 MDIFNDHKNN VNWTEVSSSS EELAQKERVV AHIKDIQPQI TVFVAVMKKC NLQSPAPYLV 1380 ISSRYASVHF PRESATITLQ MPSKRKKWHP KFYKRKDKTD HMLRGQWKNF VHDNCLQEED 1440 ICLFAPTKGG RNFTFTVHLL RAAATHSTGG TDICKIGSNH NGMNANMASQ VHLKEEPDDG 1500 ENVSSESDKH GVSHESQESK DSASPSEPPY ILSRARHQLS QWQKKKVEAK VRAIQSKFPI 1560 YVAIIGRISG GDGYGRICQL ELGSRYAAAH LPDTNHQTVV LQCKGMIWQI KYDGWRKFVH 1620 DNRLHVGDFC LFELKEKKLT MEVHIIFNLR R |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR03G21720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651606.1 | 0.0 | PREDICTED: B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q6AV22 | 0.0 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A0D9VWF3 | 0.0 | A0A0D9VWF3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G21720.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-16 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|