PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21650.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 311aa    MW: 34009.7 Da    PI: 4.6269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66e-102382781055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+A++Y+k Lq
  LPERR03G21650.1 238 RKRRERINERLKVLQNLVPNG-----TKVDISTMLEEAMHYVKFLQ 278
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-14227294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.742228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12232291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-11237282No hitNo description
PfamPF000103.2E-7238278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDSGGVITEV GWSSLELSSQ AEESEMMAQL LGTCFPANGE DDHQELPWSV EASNAYYLNC  60
NASSSAYSST SSNSAGSFTL IAPSEYEGYY LSESNEALGI TAAMDLNRIQ EQGAAQFMDA  120
ILNRNGNSSF EDLADSSVNL LDNIGTSNKR KVQEQGRLDD QTKSRKSAKK AGSKRAKKMM  180
QCEGDDGVIA VTNRQSLSCC TSENDSIASQ ESPVTAKSNG KAQSGHRSAT DPQSLYARKR  240
RERINERLKV LQNLVPNGTK VDISTMLEEA MHYVKFLQLQ IKLLSSDEMW MYAPIAYNGM  300
NIGIDLNLSQ Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072062e-81AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149592e-81AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-81CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632677.10.0transcription factor bHLH139-like
RefseqXP_015632678.10.0transcription factor bHLH139-like
TrEMBLA0A0D9VWE60.0A0A0D9VWE6_9ORYZ; Uncharacterized protein
STRINGLPERR03G21650.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-49bHLH family protein