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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G21650.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 311aa MW: 34009.7 Da PI: 4.6269 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G21650.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 30.6 | 6e-10 | 238 | 278 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r+RR+riN+++ L+ l+P+ +K++ +++Le+A++Y+k Lq
LPERR03G21650.1 238 RKRRERINERLKVLQNLVPNG-----TKVDISTMLEEAMHYVKFLQ 278
9******************97.....8******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MDSGGVITEV GWSSLELSSQ AEESEMMAQL LGTCFPANGE DDHQELPWSV EASNAYYLNC 60 NASSSAYSST SSNSAGSFTL IAPSEYEGYY LSESNEALGI TAAMDLNRIQ EQGAAQFMDA 120 ILNRNGNSSF EDLADSSVNL LDNIGTSNKR KVQEQGRLDD QTKSRKSAKK AGSKRAKKMM 180 QCEGDDGVIA VTNRQSLSCC TSENDSIASQ ESPVTAKSNG KAQSGHRSAT DPQSLYARKR 240 RERINERLKV LQNLVPNGTK VDISTMLEEA MHYVKFLQLQ IKLLSSDEMW MYAPIAYNGM 300 NIGIDLNLSQ Q
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC107206 | 2e-81 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. |
GenBank | AP014959 | 2e-81 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 2e-81 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |