PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 345aa    MW: 38187.3 Da    PI: 7.9686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000171030323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C +C+ksF++  +L  H+++H
  LPERR03G21170.1 10 CRICNKSFPSYNSLGGHMNMH 30
                     9******************99 PP
2zf-C2H212.10.0005887108223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C ++F +++ L  H++ H
  LPERR03G21170.1  87 ECQLCFRVFHSRDALSMHMKAH 108
                      6*******************98 PP
3zf-C2H211.40.001254276123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +Cgk+ ++   L  H+++H
  LPERR03G21170.1 254 HECRICGKVLPSGAALGGHMKSH 276
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-7630No hitNo description
PfamPF139123.5E-7827IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951835IPR007087Zinc finger, C2H2
SMARTSM003550.51830IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-781108No hitNo description
PROSITE profilePS501579.6486113IPR007087Zinc finger, C2H2
PfamPF139123.5E-486108IPR007087Zinc finger, C2H2
SMARTSM003550.05886108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139124.0E-9254276IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141254277IPR007087Zinc finger, C2H2
SMARTSM003550.059254276IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAPAEKKHWC RICNKSFPSY NSLGGHMNMH GTRRKKKPPP SPRKAPSTAA SGRYGFRERQ  60
QRQVVCLSDS TSSDDEPEPW TLAPKTECQL CFRVFHSRDA LSMHMKAHAN HGGKMVMVEQ  120
RASRKLSPLS SADGDHGFSA VCYVPVKKAR SRRIRMDIFP TTPVTMTHGR EVVDAACVLV  180
MLSEDAYKNS DSVDEDLEMD GSLECSPQKT EMEPSSYCLD VIGDTELIKL ENYSSDEETK  240
FVSLSDVLKA TASHECRICG KVLPSGAALG GHMKSHSVTP AHEKVATFSK TSVTPSRKQH  300
LGVENELYEL NLPALSYRDC SGTRTESERN PCCVLALQAA FRVSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237RRKKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629985.11e-154uncharacterized protein LOC107280366
TrEMBLA0A0D9VW830.0A0A0D9VW83_9ORYZ; Uncharacterized protein
STRINGLPERR03G21170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-08C2H2-like zinc finger protein