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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G19480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C3H | ||||||||
Protein Properties | Length: 541aa MW: 59858.4 Da PI: 6.7873 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.6e-06 | 173 | 196 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f++ G+Ck G +C+++H + LPERR03G19480.1 173 RRPCHYFSK-GICKNGHKCQYSHHQ 196 89*******.*************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.014 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 173 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS51644 | 11.433 | 214 | 297 | IPR025605 | OST-HTH/LOTUS domain |
Pfam | PF12872 | 1.2E-16 | 214 | 292 | IPR025605 | OST-HTH/LOTUS domain |
PROSITE profile | PS50102 | 8.655 | 311 | 386 | IPR000504 | RNA recognition motif domain |
SuperFamily | SSF54928 | 1.96E-8 | 334 | 412 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 3.7E-6 | 334 | 388 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MEVPELAKLA FSRVQRVEPE NVGKILGVML LREPDEDEMV QLAYGTDAAL LARIDDAKAA 60 LAVIYARCSG HGPGGGGPPV PAGARHYSPA AAATFGFHVQ SQYWPDSPPA TMAHQELLTA 120 AEGPYSLRSH HHVLDDNMGG YYYPAGEDTF LNGSAGGGSP PARARRSNGL SSRRPCHYFS 180 KGICKNGHKC QYSHHQVYQD TLGDVYQPGA TPGSLETLEI EITDLLNSRR GQPVSIASLP 240 TLYGEKYGKG LQADGYLTES QRHGKAGYSL TRLLSRLNKI RVIERPHGQH SVVLAEDAAK 300 YMDFRGGCDT GSVPASSHQI YLTFPAESTF TEDNYGPVRD VRIPCQERRM FGFVSFQSPE 360 TVSTILMRRN PHFICGSRVL VKPYREKSKC IDRTCVDNIK PIVPYCPPRF FEFDQEHYTE 420 YDASRLMRKH LAEKRESLLE IERRCSTVRR LEALQPQFSY FDCSIEDFSP LHSPGRDSKQ 480 LDLMNPPIAS PDTLEIVSTS QAPLTHAGNI YDDHESNQIE LLPKSPFGAS VPDGNSISAV 540 I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G19480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111805 | 0.0 | AK111805.1 Oryza sativa Japonica Group cDNA clone:J013094C18, full insert sequence. | |||
GenBank | AK111902 | 0.0 | AK111902.1 Oryza sativa Japonica Group cDNA clone:J023082B02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648183.1 | 0.0 | zinc finger CCCH domain-containing protein 54 isoform X2 | ||||
Refseq | XP_015648185.1 | 0.0 | zinc finger CCCH domain-containing protein 54 isoform X3 | ||||
Refseq | XP_015648186.1 | 0.0 | zinc finger CCCH domain-containing protein 54 isoform X3 | ||||
Swissprot | Q6ZK57 | 0.0 | C3H54_ORYSJ; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | A0A0D9VVN3 | 0.0 | A0A0D9VVN3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G19480.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5256 | 2 | 2 |
Publications ? help Back to Top | |||
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