PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 191aa MW: 20166.7 Da PI: 8.7187

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G19190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5.1e-05	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+++ L H +H LPERR03G19190.1 38 FRCSVCGKAFPSHQALGGHKASH 60 89*************99998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.2E-12	37	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0068	38	60	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.23E-9	38	60	No hit	No description
PROSITE profile	PS50157	10.699	38	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.23E-9	95	122	No hit	No description
Pfam	PF13912	2.8E-11	99	123	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.65	100	122	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.411	100	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MTHDDYVSLC LMALTQAGVG GQQQQISTVR PPACELRFRC SVCGKAFPSH QALGGHKASH 60 RRPTAAVMAP THDVVVADAP SSGAEDTASS TTTISGGGRH RCSVCHRSFA TGQALGGHKR 120 CHYWDGLSVV SVTASASGSG TTSSVRNLDL NLMPLPVTAA SVRRWGEEEE VQSPLPFKKR 180 RLSSPSLDLS L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269\|PubMed:25071223}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G19190.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269\|PubMed:25071223}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616557.1	2e-84	zinc finger protein 36-like
Refseq	XP_015630035.1	2e-84	zinc finger protein 36-like
Swissprot	Q75KE5	3e-48	ZFP36_ORYSJ; Zinc finger protein 36
TrEMBL	A0A0D9VVJ7	1e-137	A0A0D9VVJ7_9ORYZ; Uncharacterized protein
STRING	LPERR03G19190.1	1e-138	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3412	32	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04340.1	5e-29	zinc finger of Arabidopsis thaliana 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang H, et al. A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice. J. Exp. Bot., 2014. 65(20): p. 5795-809 [PMID:25071223] Li W, et al. A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance. Cell, 2017. 170(1): p. 114-126.e15 [PMID:28666113]