PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G19020.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 399aa    MW: 43104.9 Da    PI: 8.5569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G19020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32125181259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkvers+ d+++++i+Y+g+Hnh+
  LPERR03G19020.1 125 DDGYNWRKYGQKAVKGGEYPRSYYKCTHSSCPVKKKVERSS-DGQITQIIYRGQHNHQ 181
                      8****************************************.***************8 PP
2WRKY104.55.6e-33290348159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  LPERR03G19020.1 290 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 348
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-29118183IPR003657WRKY domain
SuperFamilySSF1182901.57E-25123183IPR003657WRKY domain
SMARTSM007742.4E-33124182IPR003657WRKY domain
PfamPF031065.1E-25125181IPR003657WRKY domain
PROSITE profilePS5081124.398125183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-36277350IPR003657WRKY domain
SuperFamilySSF1182903.27E-29282350IPR003657WRKY domain
PROSITE profilePS5081137.172285350IPR003657WRKY domain
SMARTSM007741.0E-38290349IPR003657WRKY domain
PfamPF031061.3E-25291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MASPAAGPAP FAVPHGLSPT ALLGSPGLLS PTGNFEMSHQ QALAQVTAQA VHSPYSMINQ  60
SDYSLPFSST TTSTLASQHV SSSANVASPQ EIPTLPSHTG NSNIESTEVS HGLQTSALTV  120
DKPDDDGYNW RKYGQKAVKG GEYPRSYYKC THSSCPVKKK VERSSDGQIT QIIYRGQHNH  180
QRPPKRRSKD AGLLNEADVS PEKEDASTRS EQGSQDHSGK FEASNDGGPS ASRGRDGGDQ  240
TSGSSDSDDQ GEEEMKVKGG DTGDRNGNKR HVPAPAQRII VQTNSEVDLL DDGYRWRKYG  300
QKVVKGNPHP RSYYKCTYQG CDVKKHIERS SQDPKAVITT YEGKHSHDVP TARNSNHSAA  360
NAKVSSSSNL SNRRRQSSLR DGLRNASSAS SLQLKEESE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37110350577Probable WRKY transcription factor 4
2lex_A2e-37110350577Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G19020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1938020.0AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633314.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ702e-99WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D9VVH80.0A0A0D9VVH8_9ORYZ; Uncharacterized protein
STRINGLPERR03G19020.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-78WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]