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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G18300.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NF-YB | ||||||||
Protein Properties | Length: 211aa MW: 22278.6 Da PI: 6.8854 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 185.2 | 4.9e-58 | 22 | 117 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+plk yl+k+re+eg LPERR03G18300.2 22 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEG 115 89******************************************************************************************** PP NF-YB 96 ek 97 e+ LPERR03G18300.2 116 ER 117 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.7E-55 | 19 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-40 | 24 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.5E-28 | 27 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.0E-20 | 55 | 73 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 58 | 74 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.0E-20 | 74 | 92 | No hit | No description |
PRINTS | PR00615 | 7.0E-20 | 93 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MPDSDNDSGG PSNVGGELSS PREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS 60 EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEDYV DPLKHYLHKF REIEGERAAA 120 TTQQQSPNAA GGYAGYGGGG GGPPGGMMMM MGQPMYGSPS PPPQQQQHQH QQQQQHHMAM 180 GGRGGYGHPG GGGGGGGSSS SGLGRQDRGT A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-48 | 20 | 112 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G18300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288040 | 1e-170 | AB288040.1 Oryza sativa Japonica Group OsHAP3I gene for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AC120529 | 1e-170 | AC120529.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0039N21, complete sequence. | |||
GenBank | AK060225 | 1e-170 | AK060225.1 Oryza sativa Japonica Group cDNA clone:001-002-G06, full insert sequence. | |||
GenBank | AP014959 | 1e-170 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175350.1 | 5e-89 | nuclear transcription factor Y subunit B-8-like | ||||
Swissprot | Q75IZ7 | 5e-85 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A0D9VV89 | 1e-153 | A0A0D9VV89_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI03G21970.1 | 6e-88 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-71 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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