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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G17060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | CAMTA | ||||||||
Protein Properties | Length: 1031aa MW: 115686 Da PI: 6.5825 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 177.5 | 1.7e-55 | 21 | 137 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 l+ +krwl+++ei++iL n+++++l+ e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fq LPERR03G17060.1 21 LEAHKRWLRPTEICEILSNYRSFSLSPEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQ 114 55699***************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+ywlLee++++ivlvhylevk LPERR03G17060.1 115 RRTYWLLEENFTHIVLVHYLEVK 137 ********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 79.121 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.8E-75 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.2E-49 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.9E-7 | 447 | 533 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.8E-6 | 448 | 531 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 8.8E-17 | 448 | 532 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.18E-17 | 622 | 737 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.9E-18 | 637 | 738 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.95E-14 | 637 | 735 | No hit | No description |
PROSITE profile | PS50088 | 8.763 | 643 | 675 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.059 | 643 | 737 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.3E-8 | 648 | 738 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.31 | 676 | 705 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 440 | 715 | 744 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.57E-8 | 844 | 901 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.045 | 850 | 872 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.773 | 851 | 880 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 852 | 871 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0041 | 873 | 895 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.523 | 875 | 898 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.1E-4 | 876 | 895 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1031 aa Download sequence Send to blast |
MAETRKFVMP NQPPDISQMM LEAHKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL 60 FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL 120 LEENFTHIVL VHYLEVKGAK QNYGRAKEEI MQLSGADSPS CSNSITSQNQ MAPPIMDAAE 180 SPISGQISEY EGAEPAKFGA ADNFRASSRY HPLIEMQQPM DGIVMDSMLY PSASTICNQG 240 YHGDMLPGTS NLNSHLFTHN DIARMFDDSS TGLRDISRTL FDSVPCDEPF SGYPNGFMEP 300 TLHSSFSMIE ANNLEDSSLL ETFTSEALYT NNLSQKEADA LSFAGISSSE VNGNKCTEGS 360 TKHPLLKQLS LDLFKIESSG LKKHDSFSRW MSRELGEVVD LDIKSSSDAF WSSTEIVNAA 420 DGPSVPANGH LDAYVVSPSL SKDQLFSILD ISPSCSYIGS KTKVLVTGTF LAENVENCKW 480 SCMFGDVEVP AEVLADGALR CFAPERQSGR VPFYVTCSNR IACSEVREFE YRDSDAQYLE 540 TSYSQTHGIN EMHLQIRLEK LLSLGPDDNH LLVCGHEKLE LIEAINSLML DEKWSDQLSP 600 SISKDVTTPR NQSLKKLVKE KLHCWLICKI KDCEKGPNVL GKEGQGVIHL AAALGYDWAI 660 RPILVAGVNV NFRDAHGWTA LHWAAFCGRE RTVSILIANE AAAGALTDPT SEFPSGRTPA 720 DLASTNGHKG IAGFLAEAAL TSHLSALTIK DSKDSNVGES CGLTIAEYHP ETNSAQLPVE 780 DSCVDPLKDS LTAVRKSTQA AARIFQAFRV ESFHRKKIVE YGYDDCGLSD EHTLSLISLK 840 NVKQGHYDTH LHSAAVRIQN KFRGWKGRKE FMIVRQRIVK IQAHVRGHQV RKSYKKVVWS 900 VGIVEKVILR WRRKRPGLRN FRTEKQIECQ SQIQPAKTED EYDFLQDGRR QAEARLQRAL 960 DRVRSMTQYP EARDQYQRLT TCVAEMQQSK VMQDEMLSEA AGADVNDFMI GLEDLICRDD 1020 AQILCLFKVR K |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G17060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631089.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A0A0D9VUR5 | 0.0 | A0A0D9VUR5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G17060.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |