PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB

Protein Properties

Length: 287aa MW: 30497.4 Da PI: 7.5036

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G16640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +v+++G+g+W++++++ g+ R+ k+c++rw +yl LPERR03G16640.1 14 KGPWTPEEDIILVSYVQEHGPGNWRAVPARTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.8	1.4e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ E+ l+v++ ++lG++ W++Ia++++ +Rt++++k++w+++l LPERR03G16640.1 67 RGGFSDHEERLIVHLQALLGNR-WSAIASYLP-HRTDNDIKNFWNTHL 112 7889****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.408	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.38E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-23	65	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.757	66	116	IPR017930	Myb domain
SMART	SM00717	8.9E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-12	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.16E-11	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSYVQ EHGPGNWRAV PARTGLLRCS KSCRLRWTNY 60 LRPGIRRGGF SDHEERLIVH LQALLGNRWS AIASYLPHRT DNDIKNFWNT HLKKKLLAAN 120 HIVSSSSTPP PAKGDWERKL QTDIGLARQA LRDALSVNGA APPAVTVNAG GGDDSAAYAL 180 NARDISMMLS GWAAPSGKGA IADGIGAAES ALSEVTGAAE CSAASSASNS NPVLAPSASA 240 SSKATVAGVP PLSAIESWLL LDDSSEPRLA LEVEEQLLDV ALRNYAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-25	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-25	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	4e-25	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G16640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC084762	1e-133	AC084762.8 Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete sequence.
GenBank	AF474136	1e-133	AF474136.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBank	AP014959	1e-133	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-133	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630096.1	1e-124	myb-related protein 306
Swissprot	P81392	3e-90	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A0D9VUK5	0.0	A0A0D9VUK5_9ORYZ; Uncharacterized protein
STRING	LPERR03G16640.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	1e-87	myb domain protein 96

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]