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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR03G16120.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
NAC |
| Protein Properties |
Length: 480aa MW: 53718.3 Da PI: 9.0713 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G16120.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 86.7 | 4.2e-27 | 19 | 159 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83
lp+Gf+F+Ptd+elvv++L++k++g++ ++l+e + +++ + +P L +k+++ +e +w+fF kr+kky+ g+++ r+t +g+W
LPERR03G16120.1 19 LPAGFHFKPTDDELVVHFLRRKIAGQQmllpifIDLFEdrlsNVVDAKQLCPDPAPLVEKYEEyGEVRWFFFNKREKKYNIGTQPIRTTPNGTW 112
799************************8877763333233223444444445777786555552556*************************** PP
NAM 84 katgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127
katg+ +++ + +ge+vg +tLv+y + + + t+W+ ey+
LPERR03G16120.1 113 KATGSFRSIRTGagddgEGEVVGRVRTLVYYANGDD--QPTEWTKYEYE 159
**********98888888888**********55444..57***999996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 480 aa
Download sequence Send
to blast |
MEGSSSFKPT VKKKFVLNLP AGFHFKPTDD ELVVHFLRRK IAGQQMLLPI FIDLFEDRLS 60
NVVDAKQLCP DPAPLVEKYE EYGEVRWFFF NKREKKYNIG TQPIRTTPNG TWKATGSFRS 120
IRTGAGDDGE GEVVGRVRTL VYYANGDDQP TEWTKYEYEN VASLEEAQAK TTNKLDEWVL 180
WTIQKKQNCG KNGVRKGKKG MKRKEPSPDS GNNGGNSSAD EEQDDRSATT GDKEGRKQRK 240
GRKKGKKANV VEETPNAKQI NADIFLVKRS PAPLPPPLPE PSQSLPQVNN SINIFQDLQP 300
LAEHVPHLHS EMMGMNNFSL DPNQSIQQHQ QAIVSTMPMD PTASNSTAFS QSQLIVTSQP 360
QGVLELTRTM PFLSPTLSPS AMTMAWAQTL SVSHESSSSH YGANMMMSQN SIVNRTFPNF 420
FRYDYTYEAA DPIGHSYHHA AVAMQNNPMG RNSYANFGHG NGFFGDVQFN VAAPSPRRMF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-22 | 17 | 188 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-22 | 17 | 188 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-22 | 17 | 188 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-22 | 17 | 188 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-22 | 17 | 188 | 15 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 2e-22 | 17 | 188 | 15 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 238 | 246 | RKGRKKGKK |
