PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G15710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 168aa MW: 19843.8 Da PI: 10.2414 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.7 | 1.4e-15 | 79 | 167 | 8 | 99 |
-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 +v +++++ +++k+a+ + e+ tl++ +++g++W+v+++++kk +r +l+ GW +F+++n+L +gD+++F+l + ++ ++v+++r LPERR03G15710.1 79 GYVINKNNVEFSRKYADLYlpF----EDETLVF-QRRGKTWNVRCCITKKNSRRILK-GWAQFARDNDLFVGDICLFELLVNnKKYVMKVHIIR 166 4666666677777777666432....2334554.669********995555555565.********************7755499999999999 PP S CS B3 99 k 99 k LPERR03G15710.1 167 K 167 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.787 | 72 | 168 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-9 | 72 | 168 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.98E-16 | 77 | 166 | No hit | No description |
SuperFamily | SSF101936 | 1.55E-17 | 79 | 167 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-14 | 80 | 167 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-19 | 83 | 167 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSGSFYDIAM TNSQKEKKRR KRRDNANIPS SPVESSEDDL EWDLVPGCIA PRQNRLTHSQ 60 KKIMNEKTKE INSENHINGY VINKNNVEFS RKYADLYLPF EDETLVFQRR GKTWNVRCCI 120 TKKNSRRILK GWAQFARDND LFVGDICLFE LLVNNKKYVM KVHIIRKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 20 | KKRRK |
2 | 16 | 22 | KKRRKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G15710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629587.1 | 6e-64 | putative B3 domain-containing protein Os03g0621600 | ||||
Swissprot | Q851V1 | 1e-65 | Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0D9VU83 | 1e-122 | A0A0D9VU83_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G15710.1 | 1e-123 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-08 | B3 family protein |