 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR03G14670.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
ERF |
| Protein Properties |
Length: 244aa MW: 26360.4 Da PI: 6.2749 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G14670.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 61.9 | 1.4e-19 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+G+r+++ +g+W+AeIrdp gk +r++lg+f tae Aa+a+++a+++++g
LPERR03G14670.1 70 LYRGIRRRP-WGKWAAEIRDP---GKGARVWLGTFATAEAAARAYDRAARRIRG 119
69*******.**********8...545*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MCGGAIPLSS GHAGGGGKRS LSATEDLWPQ NPASDEDFTT PVVLPEQGAD EEEEQQPAAR 60
RQRRGERRTL YRGIRRRPWG KWAAEIRDPG KGARVWLGTF ATAEAAARAY DRAARRIRGT 120
KAKVNFPNED YNAYAYAYAY APPPYHLASS SSSSSPTSYL YPAIQPPQQQ LVTMVDYGGD 180
AVVDVGYFQP PTYEYCPGVG GGVVVPVSAA AAAAPVMTYG HGQSQEVVAP PLMWNFDDIT 240
AMPM
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 62 | 77 | RRGERRTLYRGIRRRP |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC121491 | 6e-93 | AC121491.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050D18, complete sequence. |
| GenBank | AK111414 | 6e-93 | AK111414.1 Oryza sativa Japonica Group cDNA clone:002-182-G01, full insert sequence. |
| GenBank | AP014959 | 6e-93 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 6e-93 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
