PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G14340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 349aa    MW: 35584.9 Da    PI: 4.7237
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G14340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.1e-25135195259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqK++ +s +prsYYrCt+    gCp+k++ + +++dp+ ++itY+geH+++
  LPERR03G14340.1 135 EDGHVWRKYGQKDILNSSYPRSYYRCTHMldqGCPAKRQTQPCQSDPSSFDITYHGEHTCR 195
                      8***************************9899**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.39129197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-27129197IPR003657WRKY domain
SuperFamilySSF1182901.57E-24132197IPR003657WRKY domain
SMARTSM007747.2E-35134196IPR003657WRKY domain
PfamPF031062.6E-23135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAFSSEGDVP AETVAAAVND LVEVQEGFVR MRGWVLSRDL QVQSSSPSSG PPCTELMDAM  60
MNKLSSAISA LGGGCDVAME AQAAGRWDLA AGTSAVRQMG ESSTGRRRRR GGGRGGGSRS  120
GRGRPSNKRV ATTLEDGHVW RKYGQKDILN SSYPRSYYRC THMLDQGCPA KRQTQPCQSD  180
PSSFDITYHG EHTCRDPSTI IPTAIADVAG AARDVGAAAD NIISFAAAGY ATGGVASRMG  240
REGTTTSTAT HQLSGGGDDV FSSSGEAFMQ WDELAVAVVG SAGMTSSTVG SAPGENDGGN  300
GDTAAGGGGG GGGGEGSFPS SPSAGSLGFM VGSLGTIGDE DDSFFSFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-26127195169OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G14340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629721.11e-110probable WRKY transcription factor 53 isoform X1
TrEMBLA0A0D9VTQ90.0A0A0D9VTQ9_9ORYZ; Uncharacterized protein
STRINGLPERR03G14340.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-22WRKY DNA-binding protein 55