PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G13630.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 210aa    MW: 23603.2 Da    PI: 8.0187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G13630.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.41.9e-203394259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                     +Dg++WrKYG K++++ +fpr YYrCt++   +Cp++k++++++ +dp +  +tY +eH+++
  LPERR03G13630.3 33 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKDySDPPLYSVTYYNEHTCN 94
                     8***************************99999*******976538**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-232094IPR003657WRKY domain
SuperFamilySSF1182906.54E-222694IPR003657WRKY domain
PROSITE profilePS5081115.6862796IPR003657WRKY domain
SMARTSM007747.8E-313295IPR003657WRKY domain
PfamPF031066.3E-243393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016787Molecular Functionhydrolase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSPVPSPHQS HHLGHGSRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY  60
KDNMNCPATK QIQQKDYSDP PLYSVTYYNE HTCNSAFLPL SPSEFQLQTA SGKAVSICFE  120
SSGAQEPMTN ASSPSSSAAR HSTPSENKNQ PLPRHSEAYS WGVGVVEQKP ACTELQSCST  180
ECQDAFSAGP IPEETVDAGR FGSIRFFHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-143393968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G13630.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016530.0AK101653.1 Oryza sativa Japonica Group cDNA clone:J033057D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631650.11e-156probable WRKY transcription factor 35
TrEMBLA0A0D9VTG41e-157A0A0D9VTG4_9ORYZ; Uncharacterized protein
STRINGOGLUM03G15660.11e-156(Oryza glumipatula)
STRINGORUFI03G16080.11e-156(Oryza rufipogon)
STRINGOS03T0321700-011e-156(Oryza sativa)
STRINGONIVA03G16490.31e-156(Oryza nivara)
STRINGOPUNC03G15030.51e-156(Oryza punctata)
STRINGORGLA03G0148400.11e-156(Oryza glaberrima)
STRINGOBART03G15470.11e-156(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-19WRKY DNA-binding protein 46