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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
LPERR03G12580.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
C3H |
| Protein Properties |
Length: 416aa MW: 44230.5 Da PI: 6.7244 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G12580.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 36.3 | 9.3e-12 | 345 | 369 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
ktelC+ + r+ C+yG+rC+FaHg
LPERR03G12580.1 345 KTELCNKWERGALCSYGGRCRFAHG 369
8*********88************9 PP
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| 2 | zf-CCCH | 18.6 | 3.3e-06 | 382 | 408 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt +C+ fa+ C+yG rC+F H+p
LPERR03G12580.1 382 YKTLPCQMFAAASGCPYGHRCHFRHSP 408
9***********************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MEGELSFLSP ARPSCFSFED GCSGSPTWAS MVEALIDSPT SSVSGGRGGG DGGCNSLTRA 60
SPMEKLLDSL SSRVPHCRDA GDFSSLPWAS PLEKPLESVS SSISDGRGGG ISSPTRAFPS 120
ENLLVSPPSR DSDGRGVGND RGFHSLPWVS PLEKPLESPS SCASEGRGVG NGGGFRSLPW 180
ASPHDKALES PSSCVSDGRS GGYSSPLGSM AELLEAERLL RDAMAEIADL RRERLRLGAE 240
NLHLSLLLEE LESEQRNRTS AVAPPPPKPS VEDEAVAAAA QGGAPKSIAI RSPGYLAQKQ 300
PHGQAKPQRL RVRAPQAMEP MQEAAEAGDG KEVVEVEVHR QGAVKTELCN KWERGALCSY 360
GGRCRFAHGL QELRPVIRHP RYKTLPCQMF AAASGCPYGH RCHFRHSPLP AAESSY
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC118668 | 1e-105 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. |
| GenBank | AC137267 | 1e-105 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. |
| GenBank | AP014959 | 1e-105 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 1e-105 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
