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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G11720.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
LBD |
Protein Properties |
Length: 248aa MW: 26369.6 Da PI: 7.1076 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G11720.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 114.7 | 6e-36 | 60 | 170 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal...........peeeredamsslvyeAearardPvyGavgvilkl 83
+CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll+a pe+ reda+ss+vyeAearardPvyG++g + +l
LPERR03G11720.1 60 PCAACKMLRRRCADGCVLAPYFPPTDPAKFSTAHRVFGASNIIKLLQARtslsrawgselPESAREDAVSSMVYEAEARARDPVYGCAGAVCRL 153
7*********************************************9863444444444466667***************************** PP
DUF260 84 qqqleqlkaelallkee 100
q++ e+lk++la++++
LPERR03G11720.1 154 QKEAEELKVQLARAQAD 170
************99875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MDAGSINTAA NVTVAQQPHY WLSVSPPSSA SSTCSSPPPP VLVGNTSSSS TSHGTVVLSP 60 CAACKMLRRR CADGCVLAPY FPPTDPAKFS TAHRVFGASN IIKLLQARTS LSRAWGSELP 120 ESAREDAVSS MVYEAEARAR DPVYGCAGAV CRLQKEAEEL KVQLARAQAD LLNAQAQHAN 180 LVALVCVELA ASSHSRHGHH QQLAADHALP LTPHHHPAEY GGGGAYQYYG QPLGCYDSAA 240 WDEPRLWT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC137074 | 3e-89 | AC137074.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence. |
GenBank | AK072515 | 3e-89 | AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence. |
GenBank | AP014959 | 3e-89 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 3e-89 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
GenBank | CT832143 | 3e-89 | CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence. |